RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ELOVL3Q9HB03 270 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 CMTM6Q9NX76 183 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 GRHPRQ9UBQ7 328 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 CGGBP1Q9UFW8 167 aaPredicted RBP8.35□□□□□ -1.07
VRK3-216ENST00000599342 NDRG4Q9ULP0 352 aaKnown RBP8.35□□□□□ -1.07
VRK3-216ENST00000599342 WIPI2Q9Y4P8 454 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 TIMM10BQ9Y5J6 103 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 SVEP1Q4LDE5 3571 aa8.35□□□□□ -1.07
VRK3-216ENST00000599342 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.35□□□□□ -1.074e-10■■■■■ 37.9
VRK3-216ENST00000599342 LOC100509620A0A075B734 347 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 A0A0A6YYJ9 748 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 A0A0G2JMP0 313 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 A0A0X1KG70 313 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 ISPDA4D126 451 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 H3BSA7 217 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 H7C1C5 153 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 NDUFAB1O14561 156 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 CCDC22O60826 627 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 MPZL1O95297 269 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 ABHD16AO95870 558 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 SERPINA1P01009 418 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 IGHV1-46P01743 117 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 GSTM3P21266 225 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 MPV17P39210 176 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 GPR4P46093 362 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 SLC7A2P52569 658 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 LMO4P61968 165 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 PPP1CBP62140 327 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 LCN6P62502 163 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 GUCY1A3Q02108 690 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 SLC3A1Q07837 685 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 SCRN3Q0VDG4 424 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 ZNF774Q6NX45 483 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 THSD4Q6ZMP0 1018 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 FOXL2NBQ6ZUU3 175 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 RFPL4BQ6ZWI9 263 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 MBOAT2Q6ZWT7 520 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 CBLL1Q75N03 491 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 PEG10Q86TG7 708 aaKnown RBP8.34□□□□□ -1.07
VRK3-216ENST00000599342 SLC15A3Q8IY34 581 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 LRRC75AQ8NAA5 344 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 OR4M2Q8NGB6 313 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 KLF14Q8TD94 323 aaPredicted RBP8.34□□□□□ -1.07
VRK3-216ENST00000599342 ZNF418Q8TF45 676 aaPredicted RBP8.34□□□□□ -1.07
VRK3-216ENST00000599342 CCL17Q92583 94 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 FAM162AQ96A26 154 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 MARS2Q96GW9 593 aaKnown RBP8.34□□□□□ -1.07
VRK3-216ENST00000599342 HSH2DQ96JZ2 352 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 C4orf45Q96LM5 186 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 ZNF570Q96NI8 536 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 DIRC2Q96SL1 478 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 GAL3ST1Q99999 423 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 HOPXQ9BPY8 73 aaPredicted RBP8.34□□□□□ -1.07
VRK3-216ENST00000599342 WACQ9BTA9 647 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 WNT5BQ9H1J7 359 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 CCDC134Q9H6E4 229 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 MAN2C1Q9NTJ4 1040 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 ZDHHC8Q9ULC8 765 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 SNX13Q9Y5W8 968 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 COL6A5A8TX70 2615 aa8.34□□□□□ -1.07
VRK3-216ENST00000599342 A0A087WUU8 490 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 NME4O00746 187 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 FFAR1O14842 300 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 TIMM8AO60220 97 aaPredicted RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 DOK2O60496 412 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 IGHV2-5P01817 119 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 CD14P08571 375 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 COX4I1P13073 169 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 HTR5AP47898 357 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 NUDT2P50583 147 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 MMP15P51511 669 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 ENDOGQ14249 297 aaKnown RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 ZBED5Q49AG3 693 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 MTX3Q5HYI7 312 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 ZER1Q7Z7L7 766 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 SYT9Q86SS6 491 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 NPEPL1Q8NDH3 523 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 KCTD14Q9BQ13 255 aaPredicted RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 ANKRD19PQ9H560 264 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 EFCAB1Q9HAE3 211 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 KRCC1Q9NPI7 259 aaPredicted RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 POLE4Q9NR33 117 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 GMPR2Q9P2T1 348 aaKnown RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 RPS6KA6Q9UK32 745 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 TMEM5Q9Y2B1 443 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 ADAM18Q9Y3Q7 739 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 FAM32AQ9Y421 112 aaKnown RBP8.33□□□□□ -1.08
VRK3-216ENST00000599342 CACNG2Q9Y698 323 aa8.33□□□□□ -1.08
VRK3-216ENST00000599342 TEX13CA0A0J9YWL9 993 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 PRSS37A4D1T9 235 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 ZSCAN5BA6NJL1 495 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 CDC42EP2O14613 210 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 PLPP2O43688 288 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 AHCYL1O43865 530 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 ICMTO60725 284 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 NGFP01138 241 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 COX5BP10606 129 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 FUT4P22083 530 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 TNFSF4P23510 183 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 GATA3P23771 443 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms