RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 CMC2Q9NRP2 79 aa12.28□□□□□ -0.44
SHKBP1-217ENST00000598558 POU2F3Q9UKI9 436 aa12.28□□□□□ -0.44
SHKBP1-217ENST00000598558 BAIAP2Q9UQB8 552 aa12.28□□□□□ -0.44
SHKBP1-217ENST00000598558 AKAP9Q99996 3911 aa12.28□□□□□ -0.44
SHKBP1-217ENST00000598558 NAV2Q8IVL1 2488 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 TVP23AA6NH52 213 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 OVOL3O00110 214 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 GPRIN2O60269 458 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 NR4A1P22736 598 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CRABP1P29762 137 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 TTKP33981 857 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 FABP6P51161 128 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 PPP2R2BQ00005 443 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 ADIPOQQ15848 244 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CCDC92Q53HC0 331 aaPredicted RBP12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 LINC01590Q5TEZ4 76 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 C11orf71Q6IPW1 123 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 KRT80Q6KB66 452 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC27A4Q6P1M0 643 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 ZFP1Q6P2D0 407 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CORO6Q6QEF8 472 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 VHLLQ6RSH7 139 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 DPPA2Q7Z7J5 298 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 DTX2Q86UW9 622 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 KRTAP1-3Q8IUG1 177 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 PARP8Q8N3A8 854 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 SVOPLQ8N434 492 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF511Q8NB15 262 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC30A7Q8NEW0 376 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 POM121L2Q96KW2 1035 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CCL19Q99731 98 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CIB1Q99828 191 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 OSBPL10Q9BXB5 764 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC25A19Q9HC21 320 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 MOV10Q9HCE1 1003 aaKnown RBP12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CCNB1IP1Q9NPC3 277 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 CA10Q9NS85 328 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 ASH2LQ9UBL3 628 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 KLHL21Q9UJP4 597 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 TIMM10BQ9Y5J6 103 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 LHFPL6Q9Y693 200 aa12.27□□□□□ -0.45
SHKBP1-217ENST00000598558 TMEM129A0AVI4 362 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 M0R129 80 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 RER1O15258 196 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SURF4O15260 269 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 NDUFS7O75251 213 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SPI1P17947 270 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 APOBEC3AP31941 199 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 GGT2P36268 569 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 CDKN1AP38936 164 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 WNT5AP41221 380 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 RPS27P42677 84 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 ART1P52961 327 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC25A1P53007 311 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 LSM6P62312 80 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 HIST1H3AP68431 136 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 TEKQ02763 1124 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 HSF2Q03933 536 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 PTGES3Q15185 160 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 RSPO1Q2MKA7 263 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 HIST2H3PS2Q5TEC6 136 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 HIST2H3AQ71DI3 136 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SYT9Q86SS6 491 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 DEPDC4Q8N2C3 294 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 NUP37Q8NFH4 326 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 IL17RDQ8NFM7 739 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 TMEM171Q8WVE6 324 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC7A6Q92536 515 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC29A1Q99808 456 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 KCNN2Q9H2S1 579 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 HINT3Q9NQE9 182 aaKnown RBP12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 KRT84Q9NSB2 600 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 KIF17Q9P2E2 1029 aa12.26□□□□□ -0.45
SHKBP1-217ENST00000598558 OTOGQ6ZRI0 2925 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 C12orf71A8MTZ7 269 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 STOMP27105 288 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 GUCA1AP43080 201 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 ERVS71-1P61550 626 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 EFNB1P98172 346 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 SNTB2Q13425 540 aaKnown RBP12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 DAG1Q14118 895 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 SWI5Q1ZZU3 235 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF544Q6NX49 715 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 DNM1P34Q6PK57 102 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 VASH1Q7L8A9 365 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 LRP11Q86VZ4 500 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 LINC00346Q8IVM7 164 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 MUC15Q8N387 334 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 BBS1Q8NFJ9 593 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 OR4F15Q8NGB8 312 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 DNAJC9Q8WXX5 260 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 PIGTQ969N2 578 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 FOXC2Q99958 501 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 KCNS3Q9BQ31 491 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 CXXC4Q9H2H0 198 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 OR51B6Q9H340 312 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 WDR76Q9H967 626 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF701Q9NV72 531 aaPredicted RBP12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 TVP23BQ9NYZ1 205 aa12.25□□□□□ -0.45
SHKBP1-217ENST00000598558 IQCMA0A1B0GVH7 501 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms