RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 APEX1P27695 318 aaKnown RBP13.88□□□□□ -0.19
TRIM28-213ENST00000598355 NUDT6P53370 316 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 PCBD1P61457 104 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 LSM6P62312 80 aaKnown RBP13.88□□□□□ -0.19
TRIM28-213ENST00000598355 GALK2Q01415 458 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 HSF2Q03933 536 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 RAB35Q15286 201 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 UGT2A3Q6UWM9 527 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 ZBTB46Q86UZ6 589 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 GLB1L2Q8IW92 636 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 OR1J2Q8NGS2 313 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 DDOQ99489 341 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 IFT27Q9BW83 186 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 CDH20Q9HBT6 801 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 U3KQV3 271 aa13.88□□□□□ -0.19
TRIM28-213ENST00000598355 FN1P02751 2386 aaKnown RBP13.88□□□□□ -0.19
TRIM28-213ENST00000598355 IGLV3-9A0A075B6K5 115 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 C12orf71A8MTZ7 269 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 VSTM5A8MXK1 200 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 F12P00748 615 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-213ENST00000598355 CCL2P13500 99 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 ZNF250P15622 560 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 STOMP27105 288 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 CRABP1P29762 137 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 APLNRP35414 380 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 WNT5AP41221 380 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 GUCA1AP43080 201 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-213ENST00000598355 RASSF2P50749 326 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 AQP6Q13520 282 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 ZNF362Q5T0B9 420 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-213ENST00000598355 DNM1P34Q6PK57 102 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 SVOPLQ8N434 492 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 LNX2Q8N448 690 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 NPEPL1Q8NDH3 523 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 OR10G2Q8NGC3 310 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 OR52L1Q8NGH7 329 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 AKR7LQ8NHP1 331 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 SLCO4A1Q96BD0 722 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 TSSK2Q96PF2 358 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 NMNAT3Q96T66 252 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 BCL2L14Q9BZR8 327 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 LRMDAQ9H2I8 198 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 MMADHCQ9H3L0 296 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-213ENST00000598355 EMC7Q9NPA0 242 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 ATPIF1Q9UII2 106 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 COA3Q9Y2R0 106 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-213ENST00000598355 TIMM10BQ9Y5J6 103 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 FKBP7Q9Y680 259 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 NAV3Q8IVL0 2385 aa13.87□□□□□ -0.19
TRIM28-213ENST00000598355 TANC2Q9HCD6 1990 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 OR6C68A6NDL8 312 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SYNGR3O43761 229 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SSX4O60224 188 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 CSF3P09919 207 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 GSTM3P21266 225 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 DSCR9P59020 149 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 HIST1H3AP68431 136 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 KRTAP1-1Q07627 177 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SCRN3Q0VDG4 424 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 HIST2H3PS2Q5TEC6 136 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 LEG1Q6P5S2 330 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 HIST2H3AQ71DI3 136 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 TMEM179BQ7Z7N9 219 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 JAZF1Q86VZ6 243 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SPATA24Q86W54 205 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 ZNF101Q8IZC7 436 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 OR6V1Q8N148 313 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 ZNF525Q8N782 197 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SLC26A10Q8NG04 563 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 OR4K13Q8NH42 304 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 SMR3AQ99954 134 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 NIPSNAP1Q9BPW8 284 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 GSX1Q9H4S2 264 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-213ENST00000598355 MYEF2Q9P2K5 600 aaKnown RBP13.86□□□□□ -0.19
TRIM28-213ENST00000598355 B9D1Q9UPM9 204 aa13.86□□□□□ -0.19
TRIM28-213ENST00000598355 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.86□□□□□ -0.195e-17■■■■□ 21.6
TRIM28-213ENST00000598355 ABCA2Q9BZC7 2435 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 IGHV4-30-2A0A087WSY4 118 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 FAM171A2A8MVW0 826 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 FKBP6O75344 327 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 RENP00797 406 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 FAM157BP0CG42 384 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 UCP2P55851 309 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 ERVS71-1P61550 626 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 COX10Q12887 443 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 CLEC12AQ5QGZ9 265 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 RGS7BPQ6MZT1 257 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-213ENST00000598355 ZNF774Q6NX45 483 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 VASH1Q7L8A9 365 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-213ENST00000598355 ALDH16A1Q8IZ83 802 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 SDR9C7Q8NEX9 313 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 C10orf105Q8TEF2 133 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 GIPC3Q8TF64 312 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 C11orf40Q8WZ69 217 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 FOXN4Q96NZ1 517 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 FEVQ99581 238 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 REG4Q9BYZ8 158 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 MYOZ1Q9NP98 299 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-213ENST00000598355 REV1Q9UBZ9 1251 aa13.85□□□□□ -0.19
TRIM28-213ENST00000598355 NDRG4Q9ULP0 352 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms