RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 TMED1Q13445 227 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 SLC35D3Q5M8T2 416 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 RBM48Q5RL73 367 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 OTPQ5XKR4 325 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 TFAP2EQ6VUC0 442 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 GID4Q8IVV7 300 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 ZNF100Q8IYN0 542 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 GPR137CQ8N3F9 429 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CNEP1R1Q8N9A8 125 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 PROKR2Q8NFJ6 384 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 OR6K3Q8NGY3 331 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 OR2T4Q8NH00 348 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 FNDC8Q8TC99 324 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 SMAP2Q8WU79 429 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 RFKQ969G6 155 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 APH1AQ96BI3 265 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 LGALS12Q96DT0 336 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 ZMYND19Q96E35 227 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 ZFP3Q96NJ6 502 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 NR1H4Q96RI1 486 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 RACGAP1Q9H0H5 632 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 SLCO5A1Q9H2Y9 848 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 DUSP21Q9H596 190 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 MARCH7Q9H992 704 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 CRLF2Q9HC73 371 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 PAK1IP1Q9NWT1 392 aaPredicted RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 MRPL22Q9NWU5 206 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 HAO2Q9NYQ3 351 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 Q9UFV3 132 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 WARS2Q9UGM6 360 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 PSORS1C1Q9UIG5 152 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 MOKQ9UQ07 419 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 EXOGQ9Y2C4 368 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 EMC9Q9Y3B6 208 aa8.28□□□□□ -1.08
TRIM28-208ENST00000597172 RPL36Q9Y3U8 105 aaKnown RBP8.28□□□□□ -1.08
TRIM28-208ENST00000597172 SVEP1Q4LDE5 3571 aa8.27□□□□□ -1.08
TRIM28-208ENST00000597172 TVP23AA6NH52 213 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 OR6C65A6NJZ3 312 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 SLC22A31A6NKX4 558 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 PTGES3LE9PB15 166 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 FAM20BO75063 409 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 APOL3O95236 402 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 GAAP10253 952 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 PSKH1P11801 424 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 LAP3P28838 519 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 CDAP32320 146 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 MTNR1AP48039 350 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 HCCSP53701 268 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 RPS7P62081 194 aaKnown RBP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 SLC35A2P78381 396 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 ROR2Q01974 943 aaKnown RBP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 MVKQ03426 396 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 HSF2Q03933 536 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 PIGFQ07326 219 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 GGTLC2Q14390 218 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 MEP1BQ16820 701 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 CEACAM16Q2WEN9 425 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 FBXW9Q5XUX1 488 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 TMEM211Q6ICI0 200 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 FOXL2NBQ6ZUU3 175 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 LIX1LQ8IVB5 337 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 GLB1L2Q8IW92 636 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 TIGD4Q8IY51 512 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF610Q8N9Z0 462 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 POMGNT2Q8NAT1 580 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 OR4F15Q8NGB8 312 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 OR6K6Q8NGW6 343 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 HTRA1Q92743 480 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 RNFT2Q96EX2 444 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 ALKBH3Q96Q83 286 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 RBM24Q9BX46 236 aaKnown RBP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 ULBP2Q9BZM5 246 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 WDR76Q9H967 626 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 ADGRL4Q9HBW9 690 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 BEX4Q9NWD9 120 aaPredicted RBP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.27□□□□□ -1.09
TRIM28-208ENST00000597172 MYRFQ9Y2G1 1151 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 USF3Q68DE3 2245 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 MED12LQ86YW9 2145 aa8.27□□□□□ -1.09
TRIM28-208ENST00000597172 SNTNA6NMZ2 147 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 HSPB2A8KAH6 182 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF593O00488 134 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SELENOFO60613 162 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 IL18BPO95998 194 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 LYNP07948 512 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 HTR1AP08908 422 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 MRPL3P09001 348 aaKnown RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SBK2P0C263 348 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 CD8BP10966 210 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 C21orf33P30042 268 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 CENPAP49450 140 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 CDH15P55291 814 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ARF1P84077 181 aaKnown RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ST3GAL4Q11206 333 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 FAPQ12884 760 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 STK11Q15831 433 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 HSPB2Q16082 182 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 KCNMB1Q16558 191 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 KLHL22Q53GT1 634 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 Q5PR19 223 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms