RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 FOXN4Q96NZ1 517 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 YTHDF1Q9BYJ9 559 aaKnown RBP13.11□□□□□ -0.31
TRIM28-207ENST00000597136 NELFAQ9H3P2 528 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 HAO2Q9NYQ3 351 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 UGT2A1Q9Y4X1 527 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 A0A096LPE4 126 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 A0A1W2PPZ6 126 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 OR5H1A6NKK0 313 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 FAM20BO75063 409 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 GPANK1O95872 356 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 CRHBPP24387 322 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 SLC15A1P46059 708 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 CENPAP49450 140 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 TLE4Q04727 773 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 DAZAP2Q15038 168 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-207ENST00000597136 LCN1P1Q5VSP4 162 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 LYPD4Q6UWN0 246 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 ZNF511Q8NB15 262 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 OR1K1Q8NGR3 316 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 OR52N5Q8NH56 324 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 HTRA1Q92743 480 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 BCL2L2Q92843 193 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-207ENST00000597136 RNFT2Q96EX2 444 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 NR1H4Q96RI1 486 aaPredicted RBP13.11□□□□□ -0.31
TRIM28-207ENST00000597136 RHNO1Q9BSD3 238 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 C1QTNF6Q9BXI9 259 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 MRPS18AQ9NVS2 196 aaKnown RBP13.11□□□□□ -0.31
TRIM28-207ENST00000597136 PSORS1C1Q9UIG5 152 aa13.11□□□□□ -0.31
TRIM28-207ENST00000597136 CHD3Q12873 2000 aaKnown RBP13.1□□□□□ -0.31
TRIM28-207ENST00000597136 CSMD1Q96PZ7 3565 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 A0A1W2PPR1 153 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 FAM221AA4D161 298 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 A6NNC1 897 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 CASKO14936 926 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 TFP02787 698 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 CRYGSP22914 178 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 LAP3P28838 519 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 CDAP32320 146 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 ZNF84P51523 738 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 BLVRAP53004 296 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 HSF2Q03933 536 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 GGTLC2Q14390 218 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 ABHD12BQ7Z5M8 362 aaPredicted RBP13.1□□□□□ -0.31
TRIM28-207ENST00000597136 SLC26A10Q8NG04 563 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 HSD17B8Q92506 261 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 GGHQ92820 318 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 OR10A4Q9H209 315 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 MARCH7Q9H992 704 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 FKBP14Q9NWM8 211 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 SCN3BQ9NY72 215 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 MYRFQ9Y2G1 1151 aa13.1□□□□□ -0.31
TRIM28-207ENST00000597136 CCDC168Q8NDH2 2452 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 ARFGEF3Q5TH69 2177 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 A0A1W2PPL8 197 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TVP23AA6NH52 213 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 DEFB108AA8MXU0 73 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 PTGES3LE9PB15 166 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 CTAG2O75638 210 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 APOL3O95236 402 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 MPZL1O95297 269 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 HLA-DQA2P01906 255 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 SCG5P05408 212 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 GAAP10253 952 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 PPP3CBP16298 524 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 LOXP28300 417 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TUBA1BP68363 451 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TUBA4AP68366 448 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TGFBR3Q03167 851 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 POU4F2Q12837 409 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 KLHL22Q53GT1 634 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TIMM23BQ5SRD1 257 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 OR7E24Q6IFN5 339 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 FOXL2NBQ6ZUU3 175 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TUBA1AQ71U36 451 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 ZNF540Q8NDQ6 660 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 OR51G2Q8NGK0 314 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 LGALS12Q96DT0 336 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 C14orf79Q96F83 325 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 SEC61A2Q9H9S3 476 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 SLC24A3Q9HC58 644 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 SLC17A5Q9NRA2 495 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 PAK1IP1Q9NWT1 392 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-207ENST00000597136 MRPL22Q9NWU5 206 aaKnown RBP13.09□□□□□ -0.31
TRIM28-207ENST00000597136 CNOT2Q9NZN8 540 aaKnown RBP13.09□□□□□ -0.31
TRIM28-207ENST00000597136 NPAP1Q9NZP6 1156 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 BLOC1S6Q9UL45 172 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 TPRKBQ9Y3C4 175 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 SLC25A15Q9Y619 301 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 MYO9AB2RTY4 2548 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 MAST4O15021 2626 aa13.09□□□□□ -0.31
TRIM28-207ENST00000597136 ZNF503-AS2A6NEH8 195 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 EFCAB10A6NFE3 127 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF99A8MXY4 864 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 HRGP04196 525 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 MRPL3P09001 348 aaKnown RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 PIPP12273 146 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 ATP6V1E1P36543 226 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 GUCA1AP43080 201 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 SLC35A2P78381 396 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 MRPS34P82930 218 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms