RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LYVE1Q9Y5Y7 322 aa12.97□□□□□ -0.33
TRIM28-205ENST00000595028 A0A1W2PPW3 197 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 LOC390937A0A1W2PQ73 354 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 C12orf71A8MTZ7 269 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 CD5LO43866 347 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 KRT36O76013 467 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 TP53P04637 393 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-205ENST00000595028 LCKP06239 509 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 SLC6A6P31641 620 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 GSSP48637 474 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 GDI2P50395 445 aaKnown RBP12.96□□□□□ -0.33
TRIM28-205ENST00000595028 ERVS71-1P61550 626 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 MS4A2Q01362 244 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 MAD2L1BPQ15013 274 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-205ENST00000595028 CARTPTQ16568 116 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 C1orf94Q6P1W5 598 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 PGBD2Q6P3X8 592 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 PTCHD4Q6ZW05 846 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 SYT9Q86SS6 491 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 CCDC124Q96CT7 223 aaKnown RBP12.96□□□□□ -0.33
TRIM28-205ENST00000595028 ASB9Q96DX5 294 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 C1orf21Q9H246 121 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 TAS2R1Q9NYW7 299 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 REV1Q9UBZ9 1251 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 TIMM10BQ9Y5J6 103 aa12.96□□□□□ -0.33
TRIM28-205ENST00000595028 IGLV3-9A0A075B6K5 115 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 LOC100509620A0A075B734 347 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 C5orf49A4QMS7 147 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 IMPA2O14732 288 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 KHDRBS3O75525 346 aaKnown RBP12.95□□□□□ -0.34
TRIM28-205ENST00000595028 SCG5P05408 212 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 DAOP14920 347 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 ZNF250P15622 560 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 USF1P22415 310 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-205ENST00000595028 CCNOP22674 350 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 WNT5AP41221 380 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 RAD52P43351 418 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 NR4A2P43354 598 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 UCP2P55851 309 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 KLF3P57682 345 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-205ENST00000595028 SCRN3Q0VDG4 424 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 TSPAN31Q12999 210 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 RFX4Q33E94 735 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 ZNF774Q6NX45 483 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 UGT2A3Q6UWM9 527 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 ZNF620Q6ZNG0 422 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 TRPM8Q7Z2W7 1104 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 ALDH16A1Q8IZ83 802 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 ZNF101Q8IZC7 436 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 OR4C15Q8NGM1 316 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 BCAS4Q8TDM0 211 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 CLPTM1LQ96KA5 538 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 FOXN4Q96NZ1 517 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 WACQ9BTA9 647 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 MS4A5Q9H3V2 200 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 DUSP13Q9UII6 198 aa12.95□□□□□ -0.34
TRIM28-205ENST00000595028 MALRD1Q5VYJ5 2156 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 TNFRSF11BO00300 401 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 ARPC3O15145 178 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 TLX2O43763 284 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 SLC16A7O60669 478 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 ICMTO60725 284 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 STAMBPO95630 424 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 CDKN2AP42771 156 aaKnown RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 HMGA2P52926 109 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 GGTLC2Q14390 218 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 NKPD1Q17RQ9 610 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 RFPL4BQ6ZWI9 263 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 GLB1L2Q8IW92 636 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 ICA1LQ8NDH6 482 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 OR9Q2Q8NGE9 314 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 OR1J1Q8NGS3 322 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 SYNPRQ8TBG9 265 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 GNPDA2Q8TDQ7 276 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 C11orf40Q8WZ69 217 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 POP5Q969H6 163 aaKnown RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 SAMD8Q96LT4 415 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 ERMAPQ96PL5 475 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 SNX18Q96RF0 628 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 BTBD10Q9BSF8 475 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 IFT27Q9BW83 186 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 TRIM15Q9C019 465 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 BPESC1Q9GZL8 116 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 NUAK2Q9H093 628 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 RERGLQ9H628 205 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 NDRG4Q9ULP0 352 aaKnown RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 COA3Q9Y2R0 106 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-205ENST00000595028 CDH10Q9Y6N8 788 aa12.94□□□□□ -0.34
TRIM28-205ENST00000595028 IGHV4-61A0A0C4DH41 118 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 DOK2O60496 412 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 UBOX5O94941 541 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 CLPTM1O96005 669 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 COX5BP10606 129 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 NAT2P11245 290 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 GIFP27352 417 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 SELENOVP59797 346 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 AQP6Q13520 282 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 FAM98BQ52LJ0 330 aaKnown RBP12.93□□□□□ -0.34
TRIM28-205ENST00000595028 C6orf52Q5T4I8 152 aa12.93□□□□□ -0.34
TRIM28-205ENST00000595028 ZNF770Q6IQ21 691 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms