RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SDHAP31040 664 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 SLC6A6P31641 620 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF84P51523 738 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 RPS6KA3P51812 740 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 MYBPC1Q00872 1141 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 CD47Q08722 323 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 PPP1R8Q12972 351 aaKnown RBP10.74□□□□□ -0.69
UPF1-203ENST00000594504 CCNIQ14094 377 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 RFX4Q33E94 735 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 NRN1LQ496H8 165 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 THEM4Q5T1C6 240 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 C10orf128Q5T292 105 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF620Q6ZNG0 422 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 LRP11Q86VZ4 500 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF786Q8N393 782 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 AQP11Q8NBQ7 271 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF540Q8NDQ6 660 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 FGFBP3Q8TAT2 258 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 SLCO4A1Q96BD0 722 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 NMD3Q96D46 503 aaKnown RBP10.74□□□□□ -0.69
UPF1-203ENST00000594504 Q96M85 177 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF570Q96NI8 536 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 RBP7Q96R05 134 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 DGCR6LQ9BY27 220 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 OR52D1Q9H346 318 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 TMEM38BQ9NVV0 291 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZNF224Q9NZL3 707 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.74□□□□□ -0.69
UPF1-203ENST00000594504 DNAJB9Q9UBS3 223 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 IL20RAQ9UHF4 553 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 FZR1Q9UM11 496 aa10.74□□□□□ -0.69
UPF1-203ENST00000594504 TEX13CA0A0J9YWL9 993 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 ARRDC5A6NEK1 342 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 TXNDC12O95881 172 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 GASTP01350 101 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 OR8G3PP0DMU2 310 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 ZNF35P13682 527 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 ZNF14P17017 642 aaPredicted RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 HNF1AP20823 631 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 GSTM3P21266 225 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 PTDSS1P48651 473 aaKnown RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 CHN2P52757 468 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 KRR1Q13601 381 aaKnown RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 RIN1Q13671 783 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 GSG1Q2KHT4 349 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 MESTQ5EB52 335 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 RPL13AP3Q6NVV1 102 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 SLC25A47Q6Q0C1 308 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 ADCK1Q86TW2 530 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 OR10G2Q8NGC3 310 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 GIPC3Q8TF64 312 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 UTP4Q969X6 686 aaKnown RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 SYT3Q9BQG1 590 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 MYEF2Q9P2K5 600 aaKnown RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 REV1Q9UBZ9 1251 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 TMEFF2Q9UIK5 374 aaPredicted RBP10.73□□□□□ -0.69
UPF1-203ENST00000594504 CMAHPQ9Y471 501 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 IER3IP1Q9Y5U9 82 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 CDH10Q9Y6N8 788 aa10.73□□□□□ -0.69
UPF1-203ENST00000594504 SLC22A23A1A5C7 686 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 PRSS37A4D1T9 235 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 IMPA2O14732 288 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 WNT9BO14905 357 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 ARPC3O15145 178 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 MGRN1O60291 552 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 DEAF1O75398 565 aaPredicted RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 E2F6O75461 281 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 FARS2O95363 451 aaKnown RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 SLC2A10O95528 541 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 HPXP02790 462 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 ERCC1P07992 297 aaPredicted RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 ALDH3B1P43353 468 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 GIPRP48546 466 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 RAB1AP62820 205 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 MRPS34P82930 218 aaKnown RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 FMODQ06828 376 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 RAB39AQ14964 217 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 MAD2L1BPQ15013 274 aaPredicted RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 ELFN2Q5R3F8 820 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 CD300LDQ6UXZ3 194 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 RASSF6Q6ZTQ3 369 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 DPPA2Q7Z7J5 298 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 SKA3Q8IX90 412 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 SLC22A24Q8N4F4 322 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 CLDN22Q8N7P3 220 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 LINC01356Q8N9X3 169 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 IL17RDQ8NFM7 739 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 OR52L1Q8NGH7 329 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 MRPL24Q96A35 216 aaKnown RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 RASD2Q96D21 266 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 DUS3LQ96G46 650 aaKnown RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 SAMD8Q96LT4 415 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 ERMAPQ96PL5 475 aaPredicted RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 IFT27Q9BW83 186 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 DENND2DQ9H6A0 471 aaPredicted RBP10.72□□□□□ -0.69
UPF1-203ENST00000594504 NARFLQ9H6Q4 476 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 ARMC1Q9NVT9 282 aa10.72□□□□□ -0.69
UPF1-203ENST00000594504 IGKV1D-43A0A0B4J1Z2 117 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 H7C1C5 153 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 SOCS2O14508 198 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms