RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 HLA-DQB1P01920 261 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 CD2P06729 351 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 CSF3P09919 207 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 H2BFMP0C1H6 154 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 SLC2A2P11168 524 aaPredicted RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 ATF1P18846 271 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 ENPP1P22413 925 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 GDF1P27539 372 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 GUCA1AP43080 201 aaPredicted RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 ZNF133P52736 654 aaPredicted RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 FOXO1Q12778 655 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 TCF15Q12870 199 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 ASAH1Q13510 395 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 PDSS1Q5T2R2 415 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 TRIQKQ629K1 86 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 OR7E24Q6IFN5 339 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 ZNF704Q6ZNC4 412 aaPredicted RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 YRDCQ86U90 279 aaKnown RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 OR2M7Q8NG81 312 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 OR9K2Q8NGE7 335 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 OR2AJ1Q8NGZ0 328 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 MCHR2Q969V1 340 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 KCNJ15Q99712 375 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 NIPAL2Q9H841 368 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 BRD7Q9NPI1 651 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 DEPPQ9NTK1 212 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 GLTPQ9NZD2 209 aa12.62□□□□□ -0.39
LIG3-205ENST00000585941 AK6Q9Y3D8 172 aaKnown RBP12.62□□□□□ -0.39
LIG3-205ENST00000585941 MED12Q93074 2177 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 IFITM5A6NNB3 132 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TNFSF11O14788 317 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 RAMP1O60894 148 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TRAPPC6AO75865 159 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 ISG15P05161 165 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 QDPRP09417 244 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 CSRP1P21291 193 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 NR4A2P43354 598 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 CSNK1A1P48729 337 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 PITPNBP48739 271 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 MMP16P51512 607 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 RRADP55042 308 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SCAND1P57086 179 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 CARD18P57730 90 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 KLHL24Q6TFL4 600 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 IGF2-ASQ6U949 168 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 STAC2Q6ZMT1 411 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 C19orf18Q8NEA5 215 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 IL17RDQ8NFM7 739 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 OR6N1Q8NGY5 312 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 ZNF671Q8TAW3 534 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TSEN15Q8WW01 171 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 TMEM54Q969K7 222 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TMEM106AQ96A25 262 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 B3GAT2Q9NPZ5 323 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TBC1D24Q9ULP9 559 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 POLR1DQ9Y2S0 133 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 CNTRLQ7Z7A1 2325 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 A0A1B0GTH9 108 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SPAARA0A1B0GVQ0 90 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TTLL8A6PVC2 850 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SRSF10O75494 262 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 RFPL3SP0C7P2 107 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 UBCP0CG48 685 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 CALCBP10092 127 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 POU3F2P20265 443 aaPredicted RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 ACHEP22303 614 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SOX2P48431 317 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SUCLG1P53597 346 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 LSM6P62312 80 aaKnown RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 PITPNAQ00169 270 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 OR1C1Q15619 314 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 C10orf128Q5T292 105 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 TMEM244Q5VVB8 128 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 HACD4Q5VWC8 232 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 CARD17Q5XLA6 110 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SPINK14Q6IE38 97 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 PYHIN1Q6K0P9 492 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SPATC1Q76KD6 591 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 GDPD3Q7L5L3 318 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 ZNF554Q86TJ5 538 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 GGNQ86UU5 652 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 LINC00346Q8IVM7 164 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 ZNF433Q8N7K0 673 aaPredicted RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 OR2V1Q8NHB1 315 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 HTRA1Q92743 480 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SLAMF6Q96DU3 332 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 OR2M2Q96R28 347 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SLC22A4Q9H015 551 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 SEC61A2Q9H9S3 476 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 HHLA2Q9UM44 414 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 GTF2A1LQ9UNN4 478 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 RCE1Q9Y256 329 aa12.61□□□□□ -0.39
LIG3-205ENST00000585941 KLF13Q9Y2Y9 288 aaPredicted RBP12.61□□□□□ -0.39
LIG3-205ENST00000585941 NCKAP5O14513 1909 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 TMEM269A0A1B0GVZ9 245 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 ZNF878C9JN71 531 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 EIF1AYO14602 144 aaKnown RBP12.6□□□□□ -0.39
LIG3-205ENST00000585941 PAHP00439 452 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 PNPP00491 289 aa12.6□□□□□ -0.39
LIG3-205ENST00000585941 HPNP05981 417 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms