RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ASB5Q8WWX0 329 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 GPR137Q96N19 417 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 KCNK17Q96T54 332 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DUSP23Q9BVJ7 150 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 PRO3102Q9H379 93 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 DHDHQ9UQ10 334 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 VDAC3Q9Y277 283 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 NPTNQ9Y639 398 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 LAMA1P25391 3075 aa9.04□□□□□ -0.96
VPS53-220ENST00000576149 ARID1BQ8NFD5 2236 aaPredicted RBP9.04□□□□□ -0.96
VPS53-220ENST00000576149 LY6G6EA0A0G2JKS1 128 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 TRBV11-1A0A0K0K1C0 115 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 GGT3PA6NGU5 568 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 VSTM2BA6NLU5 285 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 NPIPA5E9PKD4 350 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 ETV2O00321 342 aaPredicted RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 SLC17A2O00624 439 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 RAD1O60671 282 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 SRSF10O75494 262 aaKnown RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 CTAG2O75638 210 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 HTR2BP41595 481 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 POU3F4P49335 361 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 EFNB2P52799 333 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 EMP2P54851 167 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 CAMK2DQ13557 499 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 SSPNQ14714 243 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 PCK2Q16822 640 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 TMEM225Q6GV28 225 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 FAM166AQ6J272 317 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 DNM1P34Q6PK57 102 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 TTC9Q92623 222 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 DDIT4LQ96D03 193 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 UTP23Q9BRU9 249 aaKnown RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 NOX3Q9HBY0 568 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 DLL4Q9NR61 685 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 SLC23A1Q9UHI7 598 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 NPIPA1Q9UND3 350 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 U3KQA8 63 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 SPEGQ15772 3267 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 IGHV5-10-1A0A0J9YXX1 117 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 H7C417 338 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 ARPC1BO15143 372 aaKnown RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 ICMTO60725 284 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 RBBP9O75884 186 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 ONECUT2O95948 504 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 FOSL2P15408 326 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 ZNF823P16415 610 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 CCL7P80098 99 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 TLE3Q04726 772 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 RELQ04864 619 aaPredicted RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 FMODQ06828 376 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 FOXF1Q12946 379 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 NR0B2Q15466 257 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 RAB11BQ15907 218 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 C2orf76Q3KRA6 126 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 LINC00303Q3SY05 128 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 ZNF385CQ66K41 422 aaPredicted RBP9.03□□□□□ -0.96
VPS53-220ENST00000576149 FAAP20Q6NZ36 180 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 BIVMQ86UB2 503 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 WDFY1Q8IWB7 410 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 OR5L2Q8NGL0 311 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 PMEPA1Q969W9 287 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 FAM3DQ96BQ1 224 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 MED30Q96HR3 178 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 CHST11Q9NPF2 352 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 DIABLOQ9NR28 239 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 SLC17A5Q9NRA2 495 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 MTFP1Q9UDX5 166 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 RARRES3Q9UL19 164 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 HRH3Q9Y5N1 445 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 R4GMQ9 66 aa9.03□□□□□ -0.96
VPS53-220ENST00000576149 LOC100289279A0A1B0GTE1 492 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CIB4A0PJX0 185 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 J3KRW8 73 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 ERVH48-1M5A8F1 160 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 ALDOBP05062 364 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CD2P06729 351 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 FBXO45P0C2W1 286 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CD37P11049 281 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 IGFBP3P17936 291 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 FSTP19883 344 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 MECP2P51608 486 aaKnown RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 HSF1Q00613 529 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 GLDNQ6ZMI3 551 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 Q6ZTK2 550 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CPEB2Q7Z5Q1 589 aaKnown RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 OR1J4Q8NGS1 313 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 ST7LQ8TDW4 575 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 SAP25Q8TEE9 199 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 PIGKQ92643 395 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 POTEKPQ9BYX7 375 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 ZNF436Q9C0F3 470 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 NPDC1Q9NQX5 325 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 SCP2D1Q9UJQ7 156 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CABIN1Q9Y6J0 2220 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 IGKV1D-43A0A0B4J1Z2 117 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 A0A1W2PPC1 479 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 LIPT2A6NK58 231 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 AQP8O94778 261 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 NDUFB6O95139 128 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms