RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ADCK1Q86TW2 530 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 JAZF1Q86VZ6 243 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 DHFR2Q86XF0 187 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ZNF584Q8IVC4 421 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ZDHHC21Q8IVQ6 265 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 LINC00471Q8N535 108 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 MAPK1IP1LQ8NDC0 245 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ICA1LQ8NDH6 482 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ZNF540Q8NDQ6 660 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 OR10H5Q8NGA6 315 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 FGFBP3Q8TAT2 258 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 FANK1Q8TC84 345 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 C10orf105Q8TEF2 133 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SNX33Q8WV41 574 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 C11orf40Q8WZ69 217 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 NMD3Q96D46 503 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 DHRS1Q96LJ7 313 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 Q96M85 177 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ZNF75AQ96N20 296 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 DOK1Q99704 481 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 KRTAP4-12Q9BQ66 201 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 SYT3Q9BQG1 590 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 WACQ9BTA9 647 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 MRPL37Q9BZE1 423 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 BCL2L14Q9BZR8 327 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 TRIM15Q9C019 465 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 OR51B6Q9H340 312 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 RERGLQ9H628 205 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 IL1RAPQ9NPH3 570 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 DUSP13Q9UII6 198 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 NDRG4Q9ULP0 352 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 PRPF19Q9UMS4 504 aaKnown RBP6.98□□□□□ -1.29
VPS53-214ENST00000572607 SIGLEC7Q9Y286 467 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 ADAM18Q9Y3Q7 739 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 UGT2A1Q9Y4X1 527 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 TIMM10BQ9Y5J6 103 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 USF3Q68DE3 2245 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 PRR14LQ5THK1 2151 aa6.98□□□□□ -1.29
VPS53-214ENST00000572607 CADP27708 2225 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 IGKV1D-43A0A0B4J1Z2 117 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 LOC390937A0A1W2PQ73 354 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 PRSS37A4D1T9 235 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 C5orf49A4QMS7 147 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 POM121CA8CG34 1229 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 TNFRSF11BO00300 401 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SOCS2O14508 198 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SYNGR3O43761 229 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 PTP4A3O75365 173 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 KHDRBS3O75525 346 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 LY6HO94772 140 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 RENP00797 406 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 ADRA2AP08913 450 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 MMP7P09237 267 aaPredicted RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 CCL2P13500 99 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 APEHP13798 732 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 DAOP14920 347 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 USF1P22415 310 aaPredicted RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 FPR3P25089 353 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 STOMP27105 288 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 NOS3P29474 1203 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 GCH1P30793 250 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 CENPAP49450 140 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 ARHGDIAP52565 204 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 LOXL1Q08397 574 aaPredicted RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 SCRN3Q0VDG4 424 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 CHD3Q12873 2000 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 TRIM25Q14258 630 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 GGTLC2Q14390 218 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SEC23BQ15437 767 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 RFX4Q33E94 735 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 IQCCQ4KMZ1 466 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 FAM98BQ52LJ0 330 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 MESTQ5EB52 335 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 LCN8Q6JVE9 175 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SMARCD3Q6STE5 483 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 CXXC5Q7LFL8 322 aaKnown RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 C1orf174Q8IYL3 243 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 CLDN22Q8N7P3 220 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 OR52L1Q8NGH7 329 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SYNPRQ8TBG9 265 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 BCAS4Q8TDM0 211 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 GNPDA2Q8TDQ7 276 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 NABP1Q96AH0 204 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 RASD2Q96D21 266 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 ERMAPQ96PL5 475 aaPredicted RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 GPX7Q96SL4 187 aaPredicted RBP6.97□□□□□ -1.29
VPS53-214ENST00000572607 IFT27Q9BW83 186 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SYT4Q9H2B2 425 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 TPK1Q9H3S4 243 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 MAGIXQ9H6Y5 334 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 NRIP3Q9NQ35 241 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 POLE4Q9NR33 117 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 SLCO1C1Q9NYB5 712 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 REV1Q9UBZ9 1251 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 IL20RAQ9UHF4 553 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 POLR1DQ9Y2S0 133 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 IER3IP1Q9Y5U9 82 aa6.97□□□□□ -1.29
VPS53-214ENST00000572607 TMEM129A0AVI4 362 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 INAFM1C9JVW0 142 aa6.96□□□□□ -1.3
VPS53-214ENST00000572607 IMPA2O14732 288 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms