RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 A8MXK9 166 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 PRR33A8MZF0 331 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 F5H5P2 479 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 TGFBR3LH3BV60 316 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 DUX1O43812 170 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 POU3F2P20265 443 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-204ENST00000566354 CFPP27918 469 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 PGDP52209 483 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 IGLV3-21P80748 117 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-204ENST00000566354 RASGEF1BQ0VAM2 473 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 HSPB2Q16082 182 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 NNATQ16517 81 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ALKAL2Q6UX46 152 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 OR2AK2Q8NG84 335 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 C16orf52Q8NHV5 167 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 COQ8AQ8NI60 647 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ZDHHC12Q96GR4 267 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 LOXL4Q96JB6 756 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 NUDT22Q9BRQ3 303 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 SEMA4CQ9C0C4 833 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 RAB33BQ9H082 229 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ARL6Q9H0F7 186 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 WDR76Q9H967 626 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 MMP25Q9NPA2 562 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 CDV3Q9UKY7 258 aaKnown RBP11.94□□□□□ -0.5
VPS4A-204ENST00000566354 EDARQ9UNE0 448 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 PQLC2LA1A4F0 135 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 LNP1A1A4G5 178 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 BLACEA4D250 179 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 CTAG2O75638 210 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ASAH2BP0C7U1 165 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 AKAIN1P0CW23 69 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 SELLP14151 372 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ALOX5APP20292 161 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 PLA2G7Q13093 441 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 PLA2G2CQ5R387 149 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 EEF1A1P5Q5VTE0 462 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 TMEM81Q6P7N7 255 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 GSG1LQ6UXU4 331 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 TMPRSS9Q7Z410 1059 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ATG4DQ86TL0 474 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ARHGEF39Q8N4T4 335 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 OR6M1Q8NGM8 313 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 MCHR2Q969V1 340 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 CXorf58Q96LI9 332 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 DGAT2Q96PD7 388 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 C1QTNF6Q9BXI9 259 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 SOHLH2Q9NX45 425 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 ATXN7L1Q9ULK2 861 aaPredicted RBP11.94□□□□□ -0.5
VPS4A-204ENST00000566354 OTOGLQ3ZCN5 2332 aa11.94□□□□□ -0.5
VPS4A-204ENST00000566354 FXYD6-FXYD2A0A087WZ82 144 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 A0A1B0GTH9 108 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 A8MUA0 341 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 DCTN6O00399 190 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 CLDN4O14493 209 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 TSPAN4O14817 238 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 SEC16AO15027 2179 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 ADH7P40394 386 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 SKP1P63208 163 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 SSBP1Q04837 148 aaKnown RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 GK2Q14410 553 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 KCNAB1Q14722 419 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 MCATQ8IVS2 390 aaKnown RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 MUC20Q8N307 709 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 TCTN2Q96GX1 697 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 COL25A1Q9BXS0 654 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 FXYD6Q9H0Q3 95 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 OR10A5Q9H207 317 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 CBY1Q9Y3M2 126 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 A0A0A6YYC8 382 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 TVP23AA6NH52 213 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 I3L1I5 382 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 PHYHO14832 338 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 AQP8O94778 261 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 SIX6O95475 246 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 F13BP05160 661 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 ZNF35P13682 527 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 GTF2F2P13984 249 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 MAT1AQ00266 395 aaKnown RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 OC90Q02509 493 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 FUT7Q11130 342 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 BTN1A1Q13410 526 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 C2orf68Q2NKX9 166 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 PLXDC1Q8IUK5 500 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 OR51D1Q8NGF3 324 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 OR5T2Q8NGG2 359 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 OR6N2Q8NGY6 317 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 TNFAIP8L1Q8WVP5 186 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 DCBLD2Q96PD2 775 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 LPAR4Q99677 370 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 PELOQ9BRX2 385 aaKnown RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 ALX4Q9H161 411 aaPredicted RBP11.93□□□□□ -0.5
VPS4A-204ENST00000566354 PRTFDC1Q9NRG1 225 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 CYB5R1Q9UHQ9 305 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 ERVK-19Q9WJR5 959 aa11.93□□□□□ -0.5
VPS4A-204ENST00000566354 A0A1W2PQM1 296 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 GOSR2O14653 212 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 CDC123O75794 336 aaPredicted RBP11.92□□□□□ -0.5
VPS4A-204ENST00000566354 RENP00797 406 aa11.92□□□□□ -0.5
VPS4A-204ENST00000566354 LPLP06858 475 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms