RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 AKAP1Q92667 903 aaKnown RBP eCLIP14.99□□□□□ -0.01
CLN3-217ENST00000565354 PLEKHA8Q96JA3 519 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 FOXN4Q96NZ1 517 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 GABARAPL1Q9H0R8 117 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 FN3KQ9H479 309 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 ENOPH1Q9UHY7 261 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 POLR1DQ9Y2S0 133 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 ATP23Q9Y6H3 246 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 ALPK2Q86TB3 2170 aa14.99□□□□□ -0.01
CLN3-217ENST00000565354 CUBNO60494 3623 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 ZNF503-AS2A6NEH8 195 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 IGKV3-15P01624 115 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 HLA-DQA2P01906 255 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 CECR9P0C854 216 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 PCBD1P61457 104 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 SPOCK1Q08629 439 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 GLB1L2Q8IW92 636 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 CYB561A3Q8NBI2 242 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 OR10H5Q8NGA6 315 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 NABP1Q96AH0 204 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 OTULINQ96BN8 352 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 TSSK2Q96PF2 358 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 TMEM204Q9BSN7 226 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 POLE4Q9NR33 117 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 B3GNT2Q9NY97 397 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 ZNF224Q9NZL3 707 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 CRNNQ9UBG3 495 aaPredicted RBP14.98□□□□□ -0.01
CLN3-217ENST00000565354 B9D1Q9UPM9 204 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 ORC6Q9Y5N6 252 aa14.98□□□□□ -0.01
CLN3-217ENST00000565354 ABCA1O95477 2261 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 IQCMA0A1B0GVH7 501 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 C12orf71A8MTZ7 269 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 PTHP01270 115 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 HMGN1P05114 100 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 CELA3BP08861 270 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 CST2P09228 141 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 PAICSP22234 425 aaKnown RBP14.97□□□□□ -0.01
CLN3-217ENST00000565354 IGFBP5P24593 272 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 CRISP1P54107 249 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 RAB39AQ14964 217 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 ZNF672Q499Z4 452 aaPredicted RBP14.97□□□□□ -0.01
CLN3-217ENST00000565354 FAM27BQ5VT28 67 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 C20orf204Q6ZNR8 217 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 FOXL2NBQ6ZUU3 175 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.97□□□□□ -0.01
CLN3-217ENST00000565354 SLC37A3Q8NCC5 494 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 NPEPL1Q8NDH3 523 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 PROKR2Q8NFJ6 384 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 IL17RDQ8NFM7 739 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 OR2T4Q8NH00 348 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 FBXW5Q969U6 566 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 RBM4BQ9BQ04 359 aaKnown RBP14.97□□□□□ -0.01
CLN3-217ENST00000565354 RBM4Q9BWF3 364 aaKnown RBP14.97□□□□□ -0.01
CLN3-217ENST00000565354 PRRG3Q9BZD7 231 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 GSX2Q9BZM3 304 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 RACGAP1Q9H0H5 632 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 NOX3Q9HBY0 568 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 EMC7Q9NPA0 242 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 MOKQ9UQ07 419 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 FKBP7Q9Y680 259 aa14.97□□□□□ -0.01
CLN3-217ENST00000565354 OR6C68A6NDL8 312 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 ATP6V1G2-DDX39BF2Z307 99 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 HS3ST1O14792 307 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 IGLV1-44P01699 117 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 ZNF32P17041 273 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 ESRRGP62508 458 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 NAAAQ02083 359 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 GLO1Q04760 184 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 CRMP1Q14194 572 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 OR6V1Q8N148 313 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 PQLC1Q8N2U9 271 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 PARP8Q8N3A8 854 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 FGFBP3Q8TAT2 258 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 NEUROG1Q92886 237 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 OSBPL10Q9BXB5 764 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 C1orf198Q9H425 327 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 CMC2Q9NRP2 79 aa14.96□□□□□ -0.01
CLN3-217ENST00000565354 CISD1Q9NZ45 108 aaKnown RBP14.96□□□□□ -0.01
CLN3-217ENST00000565354 RNF212BA8MTL3 300 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 SHISA9B4DS77 424 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 MITFO75030 526 aaPredicted RBP14.95□□□□□ -0.02
CLN3-217ENST00000565354 APLNRP35414 380 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 PTH2RP49190 550 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 GALK2Q01415 458 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 TMEM236Q5W0B7 351 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 KDM4DQ6B0I6 523 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 ACSM5Q6NUN0 579 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 ALDH16A1Q8IZ83 802 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 OR9Q1Q8NGQ5 310 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 OR1J2Q8NGS2 313 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 C11orf40Q8WZ69 217 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 MS4A3Q96HJ5 214 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 CIB1Q99828 191 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 WACQ9BTA9 647 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 C9orf16Q9BUW7 83 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 ZNF416Q9BWM5 594 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 CDADC1Q9BWV3 514 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 SLC25A19Q9HC21 320 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 TIMM10BQ9Y5J6 103 aa14.95□□□□□ -0.02
CLN3-217ENST00000565354 IGLV1-36A0A0B4J1U3 117 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms