RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TIMM10BQ9Y5J6 103 aa9.23□□□□□ -0.93
VPS39-208ENST00000564994 ANK2Q01484 3957 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TRBV4-1A0A0J9YWV2 114 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 A0A1W2PRQ8 180 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 PPIHO43447 177 aaKnown RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 SNX3O60493 162 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 ICMTO60725 284 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 PTP4A3O75365 173 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 NGFP01138 241 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 H1F0P07305 194 aaKnown RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 MSR1P21757 451 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 DRD4P21917 467 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 PRDX6P30041 224 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 RPL4P36578 427 aaKnown RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 OMPP47874 163 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 MMP15P51511 669 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TMEM33P57088 247 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 FXYD6P3P58550 94 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 LMO4P61968 165 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 DGCR6Q14129 220 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 SEC23BQ15437 767 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TSTQ16762 297 aaKnown RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 ZNF718Q3SXZ3 478 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 OTPQ5XKR4 325 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TMEM154Q6P9G4 183 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 THSD4Q6ZMP0 1018 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 CYP4Z1Q86W10 505 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 KLF14Q8TD94 323 aaPredicted RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 SNX33Q8WV41 574 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 IPCEF1Q8WWN9 437 aaPredicted RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 RASD2Q96D21 266 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 DHRS1Q96LJ7 313 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 GPA33Q99795 319 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 FUZQ9BT04 418 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 OR2J1Q9GZK6 312 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 SPAG4Q9NPE6 437 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 DCAF13Q9NV06 445 aaKnown RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 TREM2Q9NZC2 230 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 GRHPRQ9UBQ7 328 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 IL20RAQ9UHF4 553 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TMEFF2Q9UIK5 374 aaPredicted RBP9.22□□□□□ -0.93
VPS39-208ENST00000564994 GPR160Q9UJ42 338 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 RPS6KA6Q9UK32 745 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TMEM5Q9Y2B1 443 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 CACNG2Q9Y698 323 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 DYSFO75923 2080 aa9.22□□□□□ -0.93
VPS39-208ENST00000564994 TEX13CA0A0J9YWL9 993 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 PRSS37A4D1T9 235 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 C12orf71A8MTZ7 269 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 B4DSR2 109 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ATP8B1O43520 1251 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 SPRY3O43610 288 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 NDUFB2O95178 105 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 IGHV1-46P01743 117 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 SEMG1P04279 462 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 CTLA4P16410 223 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 RHCEP18577 417 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 HNF1AP20823 631 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 CRYBB2P43320 205 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ZNF81P51508 661 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 DVL1P1P54792 670 aaPredicted RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 PCBD1P61457 104 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 HNRNPA0Q13151 305 aaKnown RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 KRR1Q13601 381 aaKnown RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 PCGF3Q3KNV8 242 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 SPRNQ5BIV9 151 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 FGD3Q5JSP0 725 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 AVPI1Q5T686 147 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 MBNL2Q5VZF2 373 aaKnown RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 USP51Q70EK9 711 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 RRM2BQ7LG56 351 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 SYT9Q86SS6 491 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ALDH16A1Q8IZ83 802 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 OR52J3Q8NH60 311 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ABHD4Q8TB40 342 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ZNF570Q96NI8 536 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 GPX7Q96SL4 187 aaPredicted RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 POFUT1Q9H488 388 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 LPAR2Q9HBW0 351 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 NRIP3Q9NQ35 241 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 ADA2Q9NZK5 511 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 EIF3KQ9UBQ5 218 aaKnown RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 SAMD4AQ9UPU9 718 aaKnown RBP9.21□□□□□ -0.94
VPS39-208ENST00000564994 V9GYQ6 96 aa9.21□□□□□ -0.94
VPS39-208ENST00000564994 IGHV1-69-2A0A0G2JMI3 117 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 ZSCAN5BA6NJL1 495 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 AHCYL1O43865 530 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 MPZL1O95297 269 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 TFP02787 698 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 GAAP10253 952 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 GCH1P30793 250 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 SDHAP31040 664 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 MSX2P35548 267 aaPredicted RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 GUCA1AP43080 201 aaPredicted RBP9.2□□□□□ -0.94
VPS39-208ENST00000564994 GYS2P54840 703 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 PPP1CBP62140 327 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 MVKQ03426 396 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 MOGQ16653 247 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 RINLQ6ZS11 566 aa9.2□□□□□ -0.94
VPS39-208ENST00000564994 PTCHD4Q6ZW05 846 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms