RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ZNF230Q9UIE0 474 aaPredicted RBP12.12□□□□□ -0.47
CLK3-215ENST00000564353 DHDHQ9UQ10 334 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 LRP12Q9Y561 859 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 HRH3Q9Y5N1 445 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 MRPS18BQ9Y676 258 aaKnown RBP12.12□□□□□ -0.47
CLK3-215ENST00000564353 TMEM272A0A1B0GTI8 110 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 A0A1B0GUH1 482 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 TMEM212A6NML5 194 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 NDUFB6O95139 128 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 TGM6O95932 706 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 ZNF28P17035 718 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 FBLP22087 321 aaKnown RBP12.12□□□□□ -0.47
CLK3-215ENST00000564353 SLC22A6Q4U2R8 563 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 C1orf140Q5VVS0 124 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 LIN54Q6MZP7 749 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 SLC43A2Q8N370 569 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 OR1J4Q8NGS1 313 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 OR8B4Q96RC9 309 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 TINAGL1Q9GZM7 467 aaPredicted RBP12.12□□□□□ -0.47
CLK3-215ENST00000564353 PLEKHA1Q9HB21 404 aa12.12□□□□□ -0.47
CLK3-215ENST00000564353 TRAV36DV7A0A075B6V5 113 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 LGALS8O00214 317 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 XRCC3O43542 346 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 ALOX12BO75342 701 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 IFNA7P01567 189 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 RPL27P61353 136 aaKnown RBP12.11□□□□□ -0.47
CLK3-215ENST00000564353 RAB11BQ15907 218 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 MAMDC2Q7Z304 686 aaPredicted RBP12.11□□□□□ -0.47
CLK3-215ENST00000564353 CD163Q86VB7 1156 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 TTC9Q92623 222 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 SLC25A44Q96H78 314 aaPredicted RBP12.11□□□□□ -0.47
CLK3-215ENST00000564353 LAT2Q9GZY6 243 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 TRIOBPQ9H2D6 2365 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 A0A1W2PPL8 197 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 TMEM235A6NFC5 223 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 P2RY10O00398 339 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 IFNGR1P15260 489 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 CSF2RBP32927 897 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 RAB14P61106 215 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 ZNF626Q68DY1 528 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 RNF144BQ7Z419 303 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 DCXRQ7Z4W1 244 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 GALNT16Q8N428 558 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 GPR27Q9NS67 375 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 COPS7AQ9UBW8 275 aa12.11□□□□□ -0.47
CLK3-215ENST00000564353 TRBV5-7A0A0A0MS05 114 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 CCSO14618 274 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 KCNAB3O43448 404 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 SLC2A1P11166 492 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 POU3F1Q03052 451 aaPredicted RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 ATXN7L3Q14CW9 347 aaPredicted RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 ISXQ2M1V0 245 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 BEX5Q5H9J7 111 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TMEM225Q6GV28 225 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 SLC29A4Q7RTT9 530 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 FBXW5Q969U6 566 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 MCHR2Q969V1 340 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ZDHHC12Q96GR4 267 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ARL6Q9H0F7 186 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 FSCN3Q9NQT6 498 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 DIABLOQ9NR28 239 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 FBXL2Q9UKC9 423 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 MTCH2Q9Y6C9 303 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 KIF26BQ2KJY2 2108 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 H7C417 338 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 PGCP20142 388 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 NFYAP23511 347 aaPredicted RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 SORDQ00796 357 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 GFOD2Q3B7J2 385 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 SLC18B1Q6NT16 456 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TMPRSS9Q7Z410 1059 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ZNF679Q8IYX0 411 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 OR13C3Q8NGS6 347 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ASB5Q8WWX0 329 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 PHYHIPQ92561 330 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 C8orf44Q96CB5 159 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ZNF578Q96N58 590 aaPredicted RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 POFUT1Q9H488 388 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 MTFP1Q9UDX5 166 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 MAB21L2Q9Y586 359 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TEX51A0A1B0GUA7 166 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 SLC22A23A1A5C7 686 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 CCDC85CA6NKD9 419 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TOR1AO14656 332 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 SPDEFO95238 335 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TXNDC12O95881 172 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 CD1AP06126 327 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 PRSS3P35030 304 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 GNALP38405 381 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 MNDAP41218 407 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 EGR3Q06889 387 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 RASGEF1BQ0VAM2 473 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ELAVL1Q15717 326 aaKnown RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 AANATQ16613 207 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 CARD17Q5XLA6 110 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 ANKRD16Q6P6B7 361 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 FAM219AQ8IW50 185 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 BOLLQ8N9W6 283 aaKnown RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 SLC38A9Q8NBW4 561 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 GALNT11Q8NCW6 608 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms