RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TAF11Q15544 211 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 MICU2Q8IYU8 434 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 ALDH16A1Q8IZ83 802 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 SIGLECL1Q8N7X8 197 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 C1QTNF5Q9BXJ0 243 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 POLR2J2Q9GZM3 115 aaKnown RBP14.25□□□□□ -0.13
CLN3-211ENST00000564091 POLR2J3Q9H1A7 115 aaKnown RBP14.25□□□□□ -0.13
CLN3-211ENST00000564091 ZDHHC8Q9ULC8 765 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 HIF3AQ9Y2N7 669 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 PCDHGB1Q9Y5G3 927 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 NPTNQ9Y639 398 aa14.25□□□□□ -0.13
CLN3-211ENST00000564091 WNK2Q9Y3S1 2297 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 A0A1W2PPL8 197 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 FXYD1O00168 92 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 TIMM8AO60220 97 aaPredicted RBP14.24□□□□□ -0.13
CLN3-211ENST00000564091 FOXH1O75593 365 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 SCG5P05408 212 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 IFI30P13284 250 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 LIPAP38571 399 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 CTXN1P60606 82 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 TNFAIP6P98066 277 aaPredicted RBP14.24□□□□□ -0.13
CLN3-211ENST00000564091 PSG7Q13046 419 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 MTX3Q5HYI7 312 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 DEFB108BQ8NET1 73 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 OR51A7Q8NH64 312 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 LRRC58Q96CX6 371 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 BPIFA2Q96DR5 249 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 MAGEB18Q96M61 343 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 ZNF583Q96ND8 569 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 DUX5Q96PT3 197 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 POFUT1Q9H488 388 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 TMEM106BQ9NUM4 274 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 EGFL7Q9UHF1 273 aa14.24□□□□□ -0.13
CLN3-211ENST00000564091 GMNCA6NCL1 334 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 TRAPPC2LH3BP13 241 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 H7C1C5 153 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 KCNAB3O43448 404 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 ICMTO60725 284 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 IGHV2-70P01814 119 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 CD55P08174 381 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 THRBP10828 461 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 NR2C1P13056 603 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 GUCA1AP43080 201 aaPredicted RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 YAP1P46937 504 aaKnown RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 ARHGDIAP52565 204 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 LCN6P62502 163 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 CDK5R2Q13319 367 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 ENDOGQ14249 297 aaKnown RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 LRRC23Q53EV4 343 aaPredicted RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 CYBRD1Q53TN4 286 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 FOXL2NBQ6ZUU3 175 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 C1orf174Q8IYL3 243 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 LRRC75AQ8NAA5 344 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 OR8J3Q8NGG0 315 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 C10orf82Q8WW14 230 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 TPD52L3Q96J77 140 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 DIRC2Q96SL1 478 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 SH3GL1Q99961 368 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 ELOVL3Q9HB03 270 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 NTN4Q9HB63 628 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 EMC7Q9NPA0 242 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 ZNF69Q9UC07 566 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 CGGBP1Q9UFW8 167 aaPredicted RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 PURGQ9UJV8 347 aaKnown RBP14.23□□□□□ -0.13
CLN3-211ENST00000564091 A4GNTQ9UNA3 340 aa14.23□□□□□ -0.13
CLN3-211ENST00000564091 PPIAL4EA0A075B759 164 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 TRAV27A0A087WT01 109 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 PPIAL4CA0A0B4J2A2 164 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 PPIAL4DF5H284 164 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 EDF1O60869 148 aaKnown RBP14.22□□□□□ -0.13
CLN3-211ENST00000564091 ABHD16AO95870 558 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 IFNA14P01570 189 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 IGHMP01871 453 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 PPIAL4FP0DN26 164 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 MSR1P21757 451 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 PCBD1P61457 104 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 SEC61A1P61619 476 aaKnown RBP14.22□□□□□ -0.13
CLN3-211ENST00000564091 ST3GAL3Q11203 375 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 ZMAT1Q5H9K5 638 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 KLF17Q5JT82 389 aaPredicted RBP14.22□□□□□ -0.13
CLN3-211ENST00000564091 ERICH5Q6P6B1 374 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 RBMS3Q6XE24 437 aaKnown RBP14.22□□□□□ -0.13
CLN3-211ENST00000564091 NRMQ8IXM6 262 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 BCL6BQ8N143 479 aaPredicted RBP14.22□□□□□ -0.13
CLN3-211ENST00000564091 ZNF747Q9BV97 191 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 RHCGQ9UBD6 479 aa14.22□□□□□ -0.13
CLN3-211ENST00000564091 C12orf71A8MTZ7 269 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 H3BSA7 217 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 HKR1P10072 659 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 KDELR2P33947 212 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 ZNF154Q13106 437 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 FHL1Q13642 323 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 METTL21CQ5VZV1 264 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 OTPQ5XKR4 325 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 ARL9Q6T311 187 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 Q6ZR03 302 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 SPICQ8N5J4 248 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 OR2Z1Q8NG97 314 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 FNDC8Q8TC99 324 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 POP5Q969H6 163 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms