RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SHANK1Q9Y566 2161 aa4.86□□□□□ -1.63
VPS13C-209ENST00000560637 HEATR5AQ86XA9 2040 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZAR1LA6NP61 321 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 DCTN6O00399 190 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PLPP3O14495 311 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CDC14BO60729 498 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 NEURL1O76050 574 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 VAMP5O95183 116 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 WISP1O95388 367 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 TGM1P22735 817 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 RCVRNP35243 200 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 RAC3P60763 192 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 IGFBP7Q16270 282 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLC36A2Q495M3 483 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ACSM3Q53FZ2 586 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 DCDC5Q6ZRR9 648 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MOB3CQ70IA8 216 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 GTPBP8Q8N3Z3 284 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PNLDC1Q8NA58 520 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 OR51E1Q8TCB6 317 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 TRUB1Q8WWH5 349 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MCHR2Q969V1 340 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CREB3L1Q96BA8 519 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 DGCR14Q96DF8 476 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLAMF6Q96DU3 332 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF764Q96H86 408 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 DCLRE1CQ96SD1 692 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PRSS27Q9BQR3 290 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLCO5A1Q9H2Y9 848 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF639Q9UID6 485 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MSRB2Q9Y3D2 182 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 KLK4Q9Y5K2 254 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 A0A087WZY1 265 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 OR6C65A6NJZ3 312 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SURF4O15260 269 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 HTR3BO95264 441 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MPIG6BO95866 241 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 THY1P04216 161 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CDK1P06493 297 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLC2A2P11168 524 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 FCGR2AP12318 317 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF32P17041 273 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MSR1P21757 451 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SDC2P34741 201 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SUMO3P55854 103 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 RPS25P62851 125 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 LTBQ06643 244 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SCRN3Q0VDG4 424 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF829Q3KNS6 432 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 OXLD1Q5BKU9 147 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SFRP5Q5T4F7 317 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 NXNL2Q5VZ03 156 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PLCXD3Q63HM9 321 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 OR10K1Q8NGX5 313 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 UBASH3BQ8TF42 649 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 FGGYQ96C11 551 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ANGPTL4Q9BY76 406 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SRXN1Q9BYN0 137 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 NDUFA13Q9P0J0 144 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PRSS50Q9UI38 385 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 FBXL3Q9UKT7 428 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CHST2Q9Y4C5 530 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CLDN16Q9Y5I7 305 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 HIVEP3Q5T1R4 2406 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 FTCDNL1E5RQL4 147 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 DENRO43583 198 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLC19A2O60779 497 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ARL6IP5O75915 188 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 GLCEO94923 617 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 TTKP33981 857 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ACTA2P62736 377 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ACTG2P63267 376 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ADARB1P78563 741 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PDCD1Q15116 288 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 MESTQ5EB52 335 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM53Q6P2H8 277 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 C5orf46Q6UWT4 87 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PGAP1Q75T13 922 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PRSS48Q7RTY5 328 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 POC5Q8NA72 575 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PAPD5Q8NDF8 572 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 FAM71CQ8NEG0 241 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 STK35Q8TDR2 534 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 RND1Q92730 232 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 TIMP4Q99727 224 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ABHD6Q9BV23 337 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF416Q9BWM5 594 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ANKRD19PQ9H560 264 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ACOT13Q9NPJ3 140 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLC7A10Q9NS82 523 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF701Q9NV72 531 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 BABAM2Q9NXR7 383 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 SLCO1C1Q9NYB5 712 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 IL20Q9NYY1 176 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 CGGBP1Q9UFW8 167 aaPredicted RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 NDRG4Q9ULP0 352 aaKnown RBP4.85□□□□□ -1.63
VPS13C-209ENST00000560637 RASD1Q9Y272 281 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 PLXND1Q9Y4D7 1925 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 NAV3Q8IVL0 2385 aa4.85□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF879B4DU55 563 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms