RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ISL1P61371 349 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 RPS7P62081 194 aaKnown RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 LSM6P62312 80 aaKnown RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 RAB1AP62820 205 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 PSG4Q00888 419 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 MAD2L1BPQ15013 274 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 OCLNQ16625 522 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 SMN1Q16637 294 aaKnown RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 GSG1Q2KHT4 349 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 SLC35D3Q5M8T2 416 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 SLC25A30Q5SVS4 291 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 LAIR2Q6ISS4 152 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF584Q8IVC4 421 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 LINC00346Q8IVM7 164 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 TIGD4Q8IY51 512 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 DEPDC4Q8N2C3 294 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 CPEB3Q8NE35 698 aaKnown RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 AKR7LQ8NHP1 331 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 FAM222BQ8WU58 562 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 MS4A3Q96HJ5 214 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 APOL4Q9BPW4 351 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 WNT5BQ9H1J7 359 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 MARCH7Q9H992 704 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 OBP2BQ9NPH6 170 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 CRNNQ9UBG3 495 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 ASH2LQ9UBL3 628 aa11.16□□□□□ -0.62
SHMT2-227ENST00000557269 USP9YO00507 2555 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-227ENST00000557269 ICE1Q9Y2F5 2266 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 IGHV1-18A0A0C4DH31 117 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 DPRXA6NFQ7 191 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 C12orf71A8MTZ7 269 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 M0R1B8 84 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 ZNF593O00488 134 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 RER1O15258 196 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 UBL3O95164 117 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 WNT11O96014 354 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 IGLV1-44P01699 117 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HRGP04196 525 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 MRPL3P09001 348 aaKnown RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CRYGSP22914 178 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 LOXP28300 417 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HTR1FP30939 366 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 NAA10P41227 235 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CDH11P55287 796 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HIST1H3AP68431 136 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 ADAM8P78325 824 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 IL5RAQ01344 420 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 IL18R1Q13478 541 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 RAB39AQ14964 217 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 PCK2Q16822 640 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 SLC36A2Q495M3 483 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CCDC92Q53HC0 331 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 PABPC1L2AQ5JQF8 200 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HIST2H3PS2Q5TEC6 136 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 SLC18B1Q6NT16 456 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CFAP77Q6ZQR2 320 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HIST2H3AQ71DI3 136 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 ERI1Q8IV48 349 aaKnown RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CCDC36Q8IYA8 594 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CNIH3Q8TBE1 160 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 MAP6Q96JE9 813 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 HS3ST6Q96QI5 342 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 INTS14Q96SY0 518 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 OR2H1Q9GZK4 316 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 RNF121Q9H920 327 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CCNB1IP1Q9NPC3 277 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 H2AFY2Q9P0M6 372 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-227ENST00000557269 CYB5R1Q9UHQ9 305 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 KLHDC2Q9Y2U9 406 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 DOPEY2Q9Y3R5 2298 aa11.15□□□□□ -0.62
SHMT2-227ENST00000557269 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-227ENST00000557269 APOL3O95236 402 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 IGKV3-15P01624 115 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 SPARCP09486 303 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 CECR9P0C854 216 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 COX6B1P14854 86 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF823P16415 610 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF14P17017 642 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ARR3P36575 388 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 PEX19P40855 299 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ENTPD1P49961 510 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 IDH3GP51553 393 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-227ENST00000557269 BLVRAP53004 296 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 NUDT6P53370 316 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 SPOCK1Q08629 439 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 AQP6Q13520 282 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 GGTLC2Q14390 218 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF774Q6NX45 483 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 SHFQ7M4L6 423 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 GID4Q8IVV7 300 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 ZNF295-AS1Q8N0V1 137 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 FAM169BQ8N8A8 192 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 OR10H5Q8NGA6 315 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 OR10S1Q8NGN2 331 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 OR6N2Q8NGY6 317 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 FBLIM1Q8WUP2 373 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 NANOS1Q8WY41 292 aaKnown RBP11.14□□□□□ -0.63
SHMT2-227ENST00000557269 PLPPR2Q96GM1 343 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 AMELYQ99218 206 aa11.14□□□□□ -0.63
SHMT2-227ENST00000557269 KCNN2Q9H2S1 579 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms