RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ENDOGQ14249 297 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 RAB35Q15286 201 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 CLEC12AQ5QGZ9 265 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 KRT80Q6KB66 452 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 PTCHD4Q6ZW05 846 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 OR10H5Q8NGA6 315 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 OR4K13Q8NH42 304 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 MRPL24Q96A35 216 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 MS4A3Q96HJ5 214 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 FEVQ99581 238 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 ZNF416Q9BWM5 594 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 TSSK6Q9BXA6 273 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 PRRG3Q9BZD7 231 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 NUAK2Q9H093 628 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 PLK3Q9H4B4 646 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 TUBG2Q9NRH3 451 aa12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 EIF3KQ9UBQ5 218 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-207ENST00000554051 CSMD2Q7Z408 3487 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 IGLV1-36A0A0B4J1U3 117 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 FAM171A2A8MVW0 826 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 H3BN98 237 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 J3QW42 95 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 SGCEO43556 437 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 DOK2O60496 412 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 PATE4P0C8F1 98 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 CD99P14209 185 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 FASP25445 335 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 GRK5P34947 590 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 THBS4P35443 961 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 CDKN2AP42771 156 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 NUDT6P53370 316 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 ATP6AP1Q15904 470 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 MOGQ16653 247 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 SWI5Q1ZZU3 235 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 VHLLQ6RSH7 139 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 ZBTB46Q86UZ6 589 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 HIPK1Q86Z02 1210 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 KRTAP1-3Q8IUG1 177 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 NPEPL1Q8NDH3 523 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 WFDC11Q8NEX6 87 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 SDR9C7Q8NEX9 313 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 OR52E2Q8NGJ4 325 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 FBXO17Q96EF6 278 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 COG8Q96MW5 612 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 NMNAT3Q96T66 252 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 OSBPL10Q9BXB5 764 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 HDHD2Q9H0R4 259 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 DYNLRB1Q9NP97 96 aa12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 RPRD1BQ9NQG5 326 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-207ENST00000554051 OTOGQ6ZRI0 2925 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 TACC2O95359 2948 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 SOX14O95416 240 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 GAAP10253 952 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 PAICSP22234 425 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 EFNA4P52798 201 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 SLC25A1P53007 311 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 PSG4Q00888 419 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 RGS7BPQ6MZT1 257 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 SLC27A4Q6P1M0 643 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 ZFP1Q6P2D0 407 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 CLEC2AQ6UVW9 174 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 LURAP1LQ8IV03 231 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 PARP8Q8N3A8 854 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 SVOPLQ8N434 492 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 ATG16L2Q8NAA4 619 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 OR5K1Q8NHB7 308 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 FGFBP3Q8TAT2 258 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 HTRA1Q92743 480 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 SLCO4A1Q96BD0 722 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 POM121L2Q96KW2 1035 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 RAB3IPQ96QF0 476 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 DCLRE1CQ96SD1 692 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 NIPSNAP1Q9BPW8 284 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 TMUB1Q9BVT8 246 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 PLA2G12AQ9BZM1 189 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 RAB1BQ9H0U4 201 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 WNT5BQ9H1J7 359 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 RERGLQ9H628 205 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 ELOVL3Q9HB03 270 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 ASH2LQ9UBL3 628 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 CGGBP1Q9UFW8 167 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 B9D1Q9UPM9 204 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 COA3Q9Y2R0 106 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 AP4S1Q9Y587 144 aa12.41□□□□□ -0.42
CCDC88C-207ENST00000554051 M0R233 179 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 IGHV4-39P01824 125 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 MT-ND5P03915 603 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 OSMP13725 252 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 APEX1P27695 318 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 HTR5AP47898 357 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 RGS6P49758 472 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 PPP1R8Q12972 351 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 ZDHHC13Q8IUH4 622 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 OR6V1Q8N148 313 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 PROKR2Q8NFJ6 384 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 GJC3Q8NFK1 279 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 SLC26A10Q8NG04 563 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 OR8D4Q8NGM9 314 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 C11orf40Q8WZ69 217 aa12.4□□□□□ -0.42
CCDC88C-207ENST00000554051 Q96MF0 132 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms