RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SLC35D2Q76EJ3 337 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 KCTD9Q7L273 389 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PPP1R3BQ86XI6 285 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR2G2Q8NGZ5 317 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 GPX8Q8TED1 209 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 FAM3DQ96BQ1 224 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MRPL48Q96GC5 212 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ELF4Q99607 663 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RNF126Q9BV68 326 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 SEMA6CQ9H3T2 930 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CYTL1Q9NRR1 136 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 UQCC1Q9NVA1 299 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PLA2G2EQ9NZK7 142 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MIOXQ9UGB7 285 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 GPN3Q9UHW5 284 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MSRAQ9UJ68 235 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PCOLCE2Q9UKZ9 415 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MRPS18BQ9Y676 258 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 COL6A3P12111 3177 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PRSS38A1L453 326 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR2AT4A6NND4 320 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 BRINP1O60477 761 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RDH16O75452 317 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 DCNP07585 359 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CD79AP11912 226 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 C5AR1P21730 350 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CD34P28906 385 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CCKBRP32239 447 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MNDAP41218 407 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ADPRHP54922 357 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 F2RL1P55085 397 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MRPS10P82664 201 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MGAT2Q10469 447 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EIF2B1Q14232 305 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 GAS6Q14393 721 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EIPR1Q53HC9 387 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ACER2Q5QJU3 275 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 AVPI1Q5T686 147 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 AGBL4Q5VU57 503 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 FIGLAQ6QHK4 219 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PARM1Q6UWI2 310 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 LINC00114Q6XXX2 140 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF765Q7L2R6 523 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 KRT77Q7Z794 578 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 SFTPA2Q8IWL1 248 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ETFBKMTQ8IXQ9 262 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ARMC10Q8N2F6 343 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 GTPBP8Q8N3Z3 284 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZSCAN4Q8NAM6 433 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PIK3IP1Q96FE7 263 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ADAD1Q96M93 576 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PARP12Q9H0J9 701 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RXFP3Q9NSD7 469 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZFP57Q9NU63 452 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CARHSP1Q9Y2V2 147 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 SLC22A7Q9Y694 548 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RP1L1Q8IWN7 2480 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ASXL3Q9C0F0 2248 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 IGKV1D-42A0A075B6H8 117 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 TRBV5-7A0A0A0MS05 114 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 C13orf42A0A1B0GVH6 325 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 C5orf52A6NGY3 159 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 TTLL8A6PVC2 850 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 HCRTR1O43613 425 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR2F2O95006 317 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PMS2P2O95744 297 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ADH1BP00325 375 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CD74P04233 296 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 CD1AP06126 327 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ABOP16442 354 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PTAFRP25105 342 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 FAUP35544 74 aaKnown RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PBX2P40425 430 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 S100A12P80511 92 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PSG6Q00889 435 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR2F1Q13607 317 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF345Q14585 488 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 WDR38Q5JTN6 314 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM240Q5SV17 173 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RPL13AP3Q6NVV1 102 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ADAMTSL4Q6UY14 1074 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ACOT7LQ6ZUV0 252 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 RNF144BQ7Z419 303 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF676Q8N7Q3 588 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR1J4Q8NGS1 313 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 OR1E3Q8WZA6 343 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 NKD1Q969G9 470 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 MCHR2Q969V1 340 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 ZBTB8AQ96BR9 441 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 GAS2L1Q99501 681 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 EPHA6Q9UF33 1036 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 C19orf53Q9UNZ5 99 aaPredicted RBP4.38□□□□□ -1.71
LIMA1-214ENST00000552783 PCDHGA1Q9Y5H4 931 aa4.38□□□□□ -1.71
LIMA1-214ENST00000552783 TRIOBPQ9H2D6 2365 aa4.37□□□□□ -1.71
LIMA1-214ENST00000552783 DCDC2BA2VCK2 349 aa4.37□□□□□ -1.71
LIMA1-214ENST00000552783 RAB19A4D1S5 217 aa4.37□□□□□ -1.71
LIMA1-214ENST00000552783 OR14I1A6ND48 311 aa4.37□□□□□ -1.71
LIMA1-214ENST00000552783 GLCEO94923 617 aa4.37□□□□□ -1.71
LIMA1-214ENST00000552783 CEACAM5P06731 702 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms