RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 RDH5Q92781 318 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 YIPF5Q969M3 257 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 MRPL24Q96A35 216 aaKnown RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 PPCDCQ96CD2 204 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 MTERF3Q96E29 417 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 ZHX1-C8orf76Q96EF9 292 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 AURKBQ96GD4 344 aaPredicted RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 FAHD2AQ96GK7 314 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 C1orf147Q96MC9 270 aaPredicted RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 C7orf26Q96N11 449 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF75AQ96N20 296 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF385AQ96PM9 386 aaKnown RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 OR7D2Q96RA2 312 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 CCT7Q99832 543 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 SLC6A7Q99884 636 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 SF3B5Q9BWJ5 86 aaKnown RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 SUCNR1Q9BXA5 334 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 OR11A1Q9GZK7 315 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 SLITRK2Q9H156 845 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 TUBB1Q9H4B7 451 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 AAMDCQ9H7C9 122 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 MOV10Q9HCE1 1003 aaKnown RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 SLC52A3Q9NQ40 469 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 ZCCHC3Q9NUD5 404 aaKnown RBP3□□□□□ -1.93
LIMA1-206ENST00000550611 DECR2Q9NUI1 292 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM45AQ9NWC5 275 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 C1orf109Q9NX04 203 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 MED29Q9NX70 200 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 TREM2Q9NZC2 230 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM181Q9P2C4 612 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 PEMTQ9UBM1 199 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 CHRNA9Q9UGM1 479 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 BAIAP2L1Q9UHR4 511 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 OSGIN1Q9UJX0 560 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 SLC9A8Q9Y2E8 581 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 PTGDR2Q9Y5Y4 395 aa3□□□□□ -1.93
LIMA1-206ENST00000550611 TMED7-TICAM2A0A0A6YYA0 188 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM72A0PK05 275 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SH3PXD2BA1X283 911 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 OR6C68A6NDL8 312 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 LIPT2A6NK58 231 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TEX22C9J3V5 150 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 G3V2L1 256 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 H3BQF6 201 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 J3QLI3 93 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SLC28A1O00337 649 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 FAAHO00519 579 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 LSM1O15116 133 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZSCAN12O43309 604 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SYNGR3O43761 229 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SEC22BO75396 215 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 STX11O75558 287 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 UPK3AO75631 287 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TIPRLO75663 272 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF432O94892 652 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 BCL10O95999 233 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 AK1P00568 194 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 CSTAP01040 98 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ERCC1P07992 297 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 CHRM4P08173 479 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 INHBAP08476 426 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 KRT16P08779 473 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SNRPAP09012 282 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SPARCP09486 303 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NUDT17P0C025 328 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 UBTFL6P0CB48 400 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SAGP10523 405 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TFPIP10646 304 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 UROSP10746 265 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 LAMP1P11279 417 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 BCKDHAP12694 445 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF35P13682 527 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ANPEPP15144 967 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EFNA1P20827 205 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 PRTN3P24158 256 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 POU1F1P28069 291 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 GCH1P30793 250 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SLC1A3P43003 542 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MTNR1AP48039 350 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 DNAJB13P59910 316 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 GNG11P61952 73 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TUBA1BP68363 451 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SLC35A1P78382 337 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 IL1RL1Q01638 556 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EGR4Q05215 589 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 GABPB1Q06547 395 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMED1Q13445 227 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 IMPG1Q17R60 797 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ARHGAP11BQ3KRB8 267 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 UGT3A2Q3SY77 523 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ATP6AP1LQ52LC2 224 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TEX35Q5T0J7 233 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM268Q5VZI3 342 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 KLHL24Q6TFL4 600 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NHLRC1Q6VVB1 395 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 CREB3L2Q70SY1 520 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TUBA1AQ71U36 451 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EIF3MQ7L2H7 374 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 OLIG3Q7RTU3 272 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 AAED1Q7RTV5 226 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms