RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 KIR2DL3P43628 341 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 RFX3P48380 749 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 HMGCS2P54868 508 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 ELLP55199 621 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-212ENST00000543766 PIGPP57054 158 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 ZBTB6Q15916 424 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 COX20Q5RI15 118 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 TMEM201Q5SNT2 666 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 WDR25Q64LD2 544 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-212ENST00000543766 UNQ9370/PRO34162Q6UXP9 181 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 ZNF621Q6ZSS3 439 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 MRPL41Q8IXM3 137 aaKnown RBP8.07□□□□□ -1.12
VPS13D-212ENST00000543766 LRRC52Q8N7C0 313 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 OR1L4Q8NGR5 311 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 OR4A16Q8NH70 328 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 OR2V2Q96R30 315 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 ACOX2Q99424 681 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 TMEM39BQ9GZU3 492 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 SEMA4GQ9NTN9 838 aa8.07□□□□□ -1.12
VPS13D-212ENST00000543766 CNOT2Q9NZN8 540 aaKnown RBP8.07□□□□□ -1.12
VPS13D-212ENST00000543766 PLEKHB1Q9UF11 243 aaPredicted RBP8.07□□□□□ -1.12
VPS13D-212ENST00000543766 FXYD6-FXYD2A0A087WZ82 144 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 PPIHO43447 177 aaKnown RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 C4BPAP04003 597 aaKnown RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 RAB5AP20339 215 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 USF1P22415 310 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 SHC1P29353 583 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CTSL3PQ5NE16 218 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 Q6ZVU0 165 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CMC1Q7Z7K0 106 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 OR6N2Q8NGY6 317 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 OR2AE1Q8NHA4 323 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 DNASE1L2Q92874 299 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 OSTF1Q92882 214 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CNTNAP3BQ96NU0 1288 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 FXYD6Q9H0Q3 95 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 MUTYHQ9UIF7 546 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 A0A1B0GVI7 797 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 FITM1A5D6W6 292 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 FAM183AA6NL82 134 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 RNASEK-C17orf49H0YIS7 233 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 BLOC1S5-TXNDC5H3BN57 136 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 TRAPPC2LH3BP13 241 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 SLC25A27O95847 323 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 NR2F6P10588 404 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ARSAP15289 507 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 BPIP17213 487 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 SLC6A12P48065 614 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CDK5R2Q13319 367 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CRMP1Q14194 572 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ZNF266Q14584 549 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 PCK2Q16822 640 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CT83Q5H943 113 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 GFI1BQ5VTD9 330 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CST9LP1Q5W188 147 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CAPN13Q6MZZ7 669 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 TMEM179Q6ZVK1 233 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 SPRED2Q7Z698 418 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 C1orf210Q8IVY1 113 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 DNAJC5GQ8N7S2 189 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CCDC71LQ8N9Z2 235 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 DMBX1Q8NFW5 382 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 OR52E5Q8NH55 327 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 RNF133Q8WVZ7 376 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 TMEM125Q96AQ2 219 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 TMEM19Q96HH6 336 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 JMJD8Q96S16 334 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 NMRAL1Q9HBL8 299 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 APOBEC3GQ9HC16 384 aaKnown RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ACOT13Q9NPJ3 140 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 INPP5EQ9NRR6 644 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CYSLTR2Q9NS75 346 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 KLK14Q9P0G3 267 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 BRCA2P51587 3418 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 LOC105371242A0A075B767 164 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 GLTPD2A6NH11 291 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 F5H768 121 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 H0YIG0 161 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 MFSD11O43934 449 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ZIC2O95409 532 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 HOXB2P14652 356 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ZNF699Q32M78 642 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 C18orf21Q32NC0 220 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 SLC8B1Q6J4K2 584 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ZNF788Q6ZQV5 615 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 C15orf54Q8N8G6 183 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 RPLP0P6Q8NHW5 317 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 PTX4Q96A99 478 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 PYCR2Q96C36 320 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 LOXL4Q96JB6 756 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CIB3Q96Q77 187 aaPredicted RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 ST6GALNAC5Q9BVH7 336 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 HRASLSQ9HDD0 168 aa8.06□□□□□ -1.12
VPS13D-212ENST00000543766 CFAP20Q9Y6A4 193 aaKnown RBP8.06□□□□□ -1.12
VPS13D-212ENST00000543766 BPTFQ12830 3046 aa8.05□□□□□ -1.12
VPS13D-212ENST00000543766 LOC100130705A0A1B0GUX0 176 aa8.05□□□□□ -1.12
VPS13D-212ENST00000543766 A0A1W2PQU0 124 aa8.05□□□□□ -1.12
VPS13D-212ENST00000543766 A0A1W2PR48 441 aa8.05□□□□□ -1.12
VPS13D-212ENST00000543766 DHRS7CA6NNS2 312 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms