RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SLC37A1P57057 533 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 MRPS21P82921 87 aaKnown RBP12.36□□□□□ -0.43
VPS33A-208ENST00000543633 ETFDHQ16134 617 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 C1orf100Q5SVJ3 147 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 C11orf87Q6NUJ2 197 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 JMJD6Q6NYC1 403 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-208ENST00000543633 FAHD2BQ6P2I3 314 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-208ENST00000543633 CBLN3Q6UW01 205 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 LRRC69Q6ZNQ3 347 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 AVL9Q8NBF6 648 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 OR10K1Q8NGX5 313 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 METTL21AQ8WXB1 218 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 FOXRED1Q96CU9 486 aaPredicted RBP12.36□□□□□ -0.43
VPS33A-208ENST00000543633 FAHD2AQ96GK7 314 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 PRRT1Q99946 306 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 B3GNT4Q9C0J1 378 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 IFT46Q9NQC8 304 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 PLCL2Q9UPR0 1127 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 MMACHCQ9Y4U1 282 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 HRH3Q9Y5N1 445 aa12.36□□□□□ -0.43
VPS33A-208ENST00000543633 TCRBV16S1A1N1A0A5B0 115 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 OR5H14A6NHG9 310 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF736B4DX44 427 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-208ENST00000543633 NDUFA2O43678 99 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 ISG15P05161 165 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 RAB3AP20336 220 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 MAOAP21397 527 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 CXCR1P25024 350 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 CD34P28906 385 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 RGS19P49795 217 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 DCAF7P61962 342 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 DHRS2Q13268 280 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 C5orf46Q6UWT4 87 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 NDUFAF7Q7L592 441 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 GALNT16Q8N428 558 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 FRMD1Q8N878 549 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 OR13H1Q8NG92 308 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 OR8S1Q8NH09 359 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 MS4A7Q9GZW8 240 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-208ENST00000543633 TXNIPQ9H3M7 391 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 C17orf105B2RV13 164 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 PRAMEF26H0Y7S4 382 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 TEX46H3BTG2 121 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 SCGNO76038 276 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 OR6A2O95222 327 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 IL2RAP01589 272 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 CTSBP07858 339 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 RORAP35398 523 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 STARP49675 285 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 PMPCAQ10713 525 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF169Q14929 603 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-208ENST00000543633 ACOT7LQ6ZUV0 252 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 BPIFB2Q8N4F0 458 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 SMRP1Q8NCR6 262 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 CLRN3Q8NCR9 226 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 OR52N5Q8NH56 324 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 DVL3Q92997 716 aaPredicted RBP12.35□□□□□ -0.43
VPS33A-208ENST00000543633 FBXW5Q969U6 566 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 LMF1Q96S06 567 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 RPP25Q9BUL9 199 aaKnown RBP12.35□□□□□ -0.43
VPS33A-208ENST00000543633 PIGMQ9H3S5 423 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 HHLA2Q9UM44 414 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 R4GMQ9 66 aa12.35□□□□□ -0.43
VPS33A-208ENST00000543633 BRWD1Q9NSI6 2320 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 RAB19A4D1S5 217 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 MEIS3P1A6NDR6 274 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 DNASE2O00115 360 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 SRSF10O75494 262 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 PNPP00491 289 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 PGCP20142 388 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 TBPP20226 339 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 CNR1P21554 472 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 CRABP1P29762 137 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 CTHP32929 405 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 RPS27P42677 84 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF117Q03924 483 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 CCDC157Q569K6 752 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 PAPD4Q6PIY7 484 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 LRFN4Q6PJG9 635 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 LYG2Q86SG7 212 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 SLC25A42Q86VD7 318 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF584Q8IVC4 421 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 SLC22A18ASQ8N1D0 253 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 PLPP7Q8NBV4 271 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 OR1J2Q8NGS2 313 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 OR10Z1Q8NGY1 313 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 ATOH1Q92858 354 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 NUDT16L1Q9BRJ7 211 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 TINAGL1Q9GZM7 467 aaPredicted RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 CHRNA10Q9GZZ6 450 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 NXF5Q9H1B4 397 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 KCNK15Q9H427 330 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 GPR27Q9NS67 375 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 MRPL22Q9NWU5 206 aaKnown RBP12.34□□□□□ -0.43
VPS33A-208ENST00000543633 TAS2R4Q9NYW5 299 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 SLC22A13Q9Y226 551 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 ATG2BQ96BY7 2078 aa12.34□□□□□ -0.43
VPS33A-208ENST00000543633 EIF1AYO14602 144 aaKnown RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 SLC25A12O75746 678 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 DXOO77932 396 aaKnown RBP12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms