RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TRAPPC2LH3BP13 241 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 OR5F1O95221 314 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 NGFP01138 241 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 CST2P09228 141 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ZNF12P17014 697 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ERVK-25P63136 954 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 CD47Q08722 323 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ZNF154Q13106 437 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 CDK5R2Q13319 367 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 SGCAQ16586 387 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 VMACQ2NL98 169 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ARMCX4Q5H9R4 360 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 MTX3Q5HYI7 312 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 KLF17Q5JT82 389 aaPredicted RBP11.45□□□□□ -0.58
SS18-204ENST00000539244 ZER1Q7Z7L7 766 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ALDH16A1Q8IZ83 802 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 SPICQ8N5J4 248 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ZNF283Q8N7M2 679 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 OR10A6Q8NH74 314 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 FNDC8Q8TC99 324 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 TMEM239Q8WW34 195 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ELOVL3Q9HB03 270 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 PATZ1Q9HBE1 687 aaKnown RBP11.45□□□□□ -0.58
SS18-204ENST00000539244 MSL2Q9HCI7 577 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 NPHS2Q9NP85 383 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 TMEM106BQ9NUM4 274 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 DCAF16Q9NXF7 216 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 ZNF69Q9UC07 566 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 HIF3AQ9Y2N7 669 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 INSIG2Q9Y5U4 225 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 AUP1Q9Y679 476 aa11.45□□□□□ -0.58
SS18-204ENST00000539244 HTR3EA5X5Y0 456 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 F5H0A9 414 aaPredicted RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 CLDN34H7C241 214 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 ANGPT2O15123 496 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 RNASE1P07998 156 aaKnown RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 THRBP10828 461 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 TUBG1P23258 451 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 LAP3P28838 519 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 SLC6A9P48067 706 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 ARHGDIAP52565 204 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 TAS2R41P59536 307 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 PCBD1P61457 104 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 TNFAIP6P98066 277 aaPredicted RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 PSG7Q13046 419 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 AGBL2Q5U5Z8 902 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 ZNF771Q7L3S4 317 aaPredicted RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 SYT9Q86SS6 491 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 LRRC28Q86X40 367 aaPredicted RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 KLHL36Q8N4N3 616 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 NSMAFQ92636 917 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 C4orf45Q96LM5 186 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 SAMD8Q96LT4 415 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 ZNF48Q96MX3 618 aaPredicted RBP11.44□□□□□ -0.58
SS18-204ENST00000539244 TUBG2Q9NRH3 451 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 RIMS3Q9UJD0 308 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 BAG5Q9UL15 447 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 SH3GLB1Q9Y371 365 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 TIMM10BQ9Y5J6 103 aa11.44□□□□□ -0.58
SS18-204ENST00000539244 SBK2P0C263 348 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 COX5BP10606 129 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 TNFRSF1AP19438 455 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 RPL27P61353 136 aaKnown RBP11.43□□□□□ -0.58
SS18-204ENST00000539244 BTG1P62324 171 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 NFYCQ13952 458 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 LAPTM4AQ15012 233 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 ALG10Q5BKT4 473 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 FAM205BPQ63HN1 556 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 ARL9Q6T311 187 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 NPEPL1Q8NDH3 523 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 RBP7Q96R05 134 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 SIGLEC11Q96RL6 698 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 WACQ9BTA9 647 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 TBCCD1Q9NVR7 557 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 EGFL7Q9UHF1 273 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 NDRG4Q9ULP0 352 aaKnown RBP11.43□□□□□ -0.58
SS18-204ENST00000539244 MED31Q9Y3C7 131 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 CMYA5Q8N3K9 4069 aa11.43□□□□□ -0.58
SS18-204ENST00000539244 POM121CA8CG34 1229 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 TIMM8AO60220 97 aaPredicted RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 PPIAL4GP0DN37 164 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 GSTM3P21266 225 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 KITLGP21583 273 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 TNFSF4P23510 183 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 CPT2P23786 658 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 SEC61A1P61619 476 aaKnown RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 IL13RA1P78552 427 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 PAX8Q06710 450 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 BAMBIQ13145 260 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 HNRNPA0Q13151 305 aaKnown RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 PIN1Q13526 163 aaPredicted RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 ENDOGQ14249 297 aaKnown RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 ZMYND11Q15326 602 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 BEND6Q5SZJ8 279 aaPredicted RBP11.42□□□□□ -0.58
SS18-204ENST00000539244 ZNF774Q6NX45 483 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 TREML4Q6UXN2 200 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 Q6ZR03 302 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 C9orf139Q6ZV77 190 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 CALHM3Q86XJ0 350 aa11.42□□□□□ -0.58
SS18-204ENST00000539244 BCL6BQ8N143 479 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms