RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 PSMD9O00233 223 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SULT1B1O43704 296 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SSNA1O43805 119 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 GPANK1O95872 356 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 PLGP00747 810 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 CD1AP06126 327 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 GP1BAP07359 652 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 H2AFB2P0C5Z0 115 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SULT1A3P0DMM9 295 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SULT1A4P0DMN0 295 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 MPLP40238 635 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 GDI2P50395 445 aaKnown RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 PUDPQ08623 228 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 AANATQ16613 207 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 ZNF528Q3MIS6 628 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SFRP4Q6FHJ7 346 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 RPL22L1Q6P5R6 122 aaKnown RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 CDC20BQ86Y33 519 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 PM20D2Q8IYS1 436 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 ZNF417Q8TAU3 575 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 ARL5BQ96KC2 179 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 IMMP1LQ96LU5 166 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 RASL10BQ96S79 203 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 ZNF587Q96SQ5 575 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 DEFB126Q9BYW3 111 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 ULBP3Q9BZM4 244 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 SYT4Q9H2B2 425 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 METTL17Q9H7H0 456 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 MRPL39Q9NYK5 338 aaKnown RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 GPN3Q9UHW5 284 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-210ENST00000538120 NUP50Q9UKX7 468 aa9.64□□□□□ -0.87
CLIP1-210ENST00000538120 GMDSO60547 372 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 AKR7A3O95154 331 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 RENP00797 406 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 KLK3P07288 261 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 COX6A1P12074 109 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 RAB3BP20337 219 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 NANOS3P60323 173 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 RPL27P61353 136 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 RELBQ01201 579 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 FOXF1Q12946 379 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 INPP5JQ15735 1006 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 GRK1Q15835 563 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 Q6ZTK2 550 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 COL27A1Q8IZC6 1860 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 MS4A15Q8N5U1 240 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 OR2T35Q8NGX2 323 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 OR2T4Q8NH00 348 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 OR6S1Q8NH40 331 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 POC1BQ8TC44 478 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 ADAMTS14Q8WXS8 1223 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 TXNIPQ9H3M7 391 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 WDR76Q9H967 626 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 BRD7Q9NPI1 651 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 SLC39A1Q9NY26 324 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 MRM2Q9UI43 246 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 VDAC3Q9Y277 283 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 PTRH2Q9Y3E5 179 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 A0A087WV48 116 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 TRABD2BA6NFA1 517 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 MS4A18H0YCH9 400 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 AHSA1O95433 338 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 ABHD16AO95870 558 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 IGHMP01871 453 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 ZNF883P0CG24 379 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 HLA-DOBP13765 273 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 EDNRAP25101 427 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 APOBEC1P41238 236 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 INSM1Q01101 510 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 SNTB2Q13425 540 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 SSPNQ14714 243 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 MS4A18Q3C1V0 323 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 IGSF11Q5DX21 431 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 SLC25A53Q5H9E4 307 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 C5orf46Q6UWT4 87 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 UNQ9370/PRO34162Q6UXP9 181 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 CHMP1BQ7LBR1 199 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 WDFY1Q8IWB7 410 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 FAM169BQ8N8A8 192 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 HAVCR2Q8TDQ0 301 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 NXPE2Q96DL1 559 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 WDR89Q96FK6 387 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 AIFM2Q9BRQ8 373 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 CHIAQ9BZP6 476 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 KLRF1Q9NZS2 232 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 B9D1Q9UPM9 204 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 AK6Q9Y3D8 172 aaKnown RBP9.63□□□□□ -0.87
CLIP1-210ENST00000538120 HS3ST3B1Q9Y662 390 aa9.63□□□□□ -0.87
CLIP1-210ENST00000538120 TRBV2A0A0J9YWF9 115 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 PRSS37A4D1T9 235 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 B4E171 279 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 B9A039 149 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 SMAD7O15105 426 aaKnown RBP9.62□□□□□ -0.87
CLIP1-210ENST00000538120 OR2T1O43869 369 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 UPK3AO75631 287 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 UBL3O95164 117 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 MMP15P51511 669 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 CLLU1Q5K131 121 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 NLRC3Q7RTR2 1065 aa9.62□□□□□ -0.87
CLIP1-210ENST00000538120 GALNTL5Q7Z4T8 443 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms