RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 KRR1Q13601 381 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 IL18Q14116 193 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 IHHQ14623 411 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CST6Q15828 149 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LRRC36Q1X8D7 754 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 EXOC3L2Q2M3D2 409 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ANKRD55Q3KP44 614 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 FBXO48Q5FWF7 155 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PHYHD1Q5SRE7 291 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PIP5KL1Q5T9C9 394 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 GPR107Q5VW38 600 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 NKAIN2Q5VXU1 208 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SEL1L3Q68CR1 1132 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF776Q68DI1 518 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 LAMTOR1Q6IAA8 161 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 FAM166AQ6J272 317 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PPP1R2P3Q6NXS1 205 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 DNAJC24Q6P3W2 148 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 C22orf39Q6P5X5 142 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF773Q6PK81 442 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 GDPD3Q7L5L3 318 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CPEB2Q7Z5Q1 589 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 LINC00523Q86TU6 105 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CACUL1Q86Y37 369 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 UMODL1-AS1Q8N2C9 162 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 STK40Q8N2I9 435 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TCAIMQ8N3R3 496 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LRRC17Q8N6Y2 441 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 NPWQ8N729 165 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LRTM2Q8N967 370 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF557Q8N988 423 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 ZNF565Q8N9K5 539 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 DCAF4L2Q8NA75 395 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 OR2A12Q8NGT7 310 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 OR2L2Q8NH16 312 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 OR8K3Q8NH51 312 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 C11orf45Q8TAV5 145 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TRMT10AQ8TBZ6 339 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 ZFP90Q8TF47 636 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 NPRL2Q8WTW4 380 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 UFD1Q92890 307 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 BIRC7Q96CA5 298 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CMTM5Q96DZ9 223 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ATXN7L3BQ96GX2 97 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ARL5BQ96KC2 179 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 IL12RB2Q99665 862 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CNPY3Q9BT09 278 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SNRNP25Q9BV90 132 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 GPR174Q9BXC1 333 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 RAB11FIP5Q9BXF6 653 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 GPR61Q9BZJ8 451 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ZYG11BQ9C0D3 744 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SLC39A8Q9C0K1 460 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SLIRPQ9GZT3 109 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 C6orf62Q9GZU0 229 aaPredicted RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 FAM96AQ9H5X1 160 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 FN3KRPQ9HA64 309 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 PDFQ9HBH1 243 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 MRPL39Q9NYK5 338 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 GLTPQ9NZD2 209 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TMEM216Q9P0N5 145 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ARMCX1Q9P291 453 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 SLC17A7Q9P2U7 560 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 CTSZQ9UBR2 303 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 LHX3Q9UBR4 397 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 GLS2Q9UI32 602 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 RAB23Q9ULC3 237 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 MRPS33Q9Y291 106 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 TRAPPC4Q9Y296 219 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ASB4Q9Y574 426 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 ALG6Q9Y672 507 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 HSPE1-MOB4S4R3N1 261 aa2.79□□□□□ -1.96
USP48-215ENST00000534705 TNRC6AQ8NDV7 1962 aaKnown RBP2.79□□□□□ -1.96
USP48-215ENST00000534705 ITPR1Q14643 2758 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 EPG5Q9HCE0 2579 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 A0A0U1RQV5 110 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 LOC100653049A0A140TA62 436 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 A0A1B0GTQ1 180 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 IQCMA0A1B0GVH7 501 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 EXOC1LA0A1B0GW35 172 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SERTM2A0A1B0GWG4 89 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 A0A1W2PQ72 361 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 HELTA6NFD8 242 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CENPXA8MT69 81 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 HACD1B0YJ81 288 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 PRSS46E5RG02 174 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 NPIPB9F8W1W9 429 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 G3V2L1 256 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CCL24O00175 119 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 NDUFS8O00217 210 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 COPEO14579 308 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 DNALI1O14645 258 aaPredicted RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 ZNF208O43345 1280 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 KDELR3O43731 214 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 MRPS14O60783 128 aaKnown RBP2.78□□□□□ -1.96
USP48-215ENST00000534705 SDC3O75056 442 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 CCNKO75909 580 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 KRT34O76011 436 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SYNGR4O95473 234 aa2.78□□□□□ -1.96
USP48-215ENST00000534705 SEMA4FO95754 770 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms