RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 COQ8AQ8NI60 647 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TNFAIP8L1Q8WVP5 186 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 MARC2Q969Z3 335 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 ARL6Q9H0F7 186 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 EXO5Q9H790 373 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 CUTCQ9NTM9 273 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 VSX1Q9NZR4 365 aaPredicted RBP17.32■□□□□ 0.36
VPS28-213ENST00000530983 DHDHQ9UQ10 334 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TCRBV16S1A1N1A0A5B0 115 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TEX46H3BTG2 121 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TSPAN2O60636 221 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 SLC25A12O75746 678 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 OR6A2O95222 327 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 MT-ATP6P00846 226 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 GABRA1P14867 456 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 ADAM8P78325 824 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TSSK4Q6SA08 328 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 KRT77Q7Z794 578 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 GABRG1Q8N1C3 465 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 OR10Z1Q8NGY1 313 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 LDAHQ9H6V9 325 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 UCK1Q9HA47 277 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 TMEM138Q9NPI0 162 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 GLS2Q9UI32 602 aa17.32■□□□□ 0.36
VPS28-213ENST00000530983 ALG1L2C9J202 215 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 NPIPB7O75200 414 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 ITGB2P05107 769 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 PPP3CBP16298 524 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 NR0B1P51843 470 aaKnown RBP17.31■□□□□ 0.36
VPS28-213ENST00000530983 CTAG1AP78358 180 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 SSBP1Q04837 148 aaKnown RBP17.31■□□□□ 0.36
VPS28-213ENST00000530983 C4orf46Q504U0 113 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 SCARB1Q8WTV0 552 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 SEH1LQ96EE3 360 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 DPYSL5Q9BPU6 564 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 TXNIPQ9H3M7 391 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 TAS2R4Q9NYW5 299 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 ARPC4-TTLL3A0A0A6YYG9 625 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 A0A1W2PQD3 144 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 H3BMH7 237 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 EIF4E2O60573 245 aaKnown RBP17.31■□□□□ 0.36
VPS28-213ENST00000530983 DXOO77932 396 aaKnown RBP17.31■□□□□ 0.36
VPS28-213ENST00000530983 PGCP20142 388 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 CALCRP30988 508 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 ELOCQ15369 112 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 TOMM20Q15388 145 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 MPPED2Q15777 294 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 CATSPERDQ86XM0 798 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 RLN3Q8WXF3 142 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 RELTQ969Z4 430 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 ABHD6Q9BV23 337 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 C1orf198Q9H425 327 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 PRMT8Q9NR22 394 aaPredicted RBP17.31■□□□□ 0.36
VPS28-213ENST00000530983 LRP12Q9Y561 859 aa17.31■□□□□ 0.36
VPS28-213ENST00000530983 A0A1W2PPC1 479 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 GP1BBP13224 206 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 IGFBP3P17936 291 aaPredicted RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 ACTBP60709 375 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 ACTG1P63261 375 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 EIF2B1Q14232 305 aaKnown RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 ELAVL1Q15717 326 aaKnown RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 GLYATL3Q5SZD4 288 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 KCTD18Q6PI47 426 aaPredicted RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 NAXDQ8IW45 347 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 LMX1AQ8TE12 382 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 DMRTA2Q96SC8 542 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 TBL1XR1Q9BZK7 514 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 ALX4Q9H161 411 aaPredicted RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 POFUT1Q9H488 388 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 DHCR7Q9UBM7 475 aaKnown RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 TMED7-TICAM2A0A0A6YYA0 188 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 MELTFP08582 738 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 HTR2CP28335 458 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 RIDAP52758 137 aaKnown RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 PLCXD2Q0VAA5 305 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 HYAL4Q2M3T9 481 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 PRAMEF17Q5VTA0 474 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 GLT8D1Q68CQ7 371 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 LRFN4Q6PJG9 635 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 TMEM205Q6UW68 189 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 GSG1LQ6UXU4 331 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 DUSP19Q8WTR2 217 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 IFT46Q9NQC8 304 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 MED11Q9P086 117 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 TMED7Q9Y3B3 224 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 HRH3Q9Y5N1 445 aa17.3■□□□□ 0.36
VPS28-213ENST00000530983 MRPS18BQ9Y676 258 aaKnown RBP17.3■□□□□ 0.36
VPS28-213ENST00000530983 ARID1BQ8NFD5 2236 aaPredicted RBP17.29■□□□□ 0.36
VPS28-213ENST00000530983 FGF2P09038 288 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 FSTP19883 344 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 TAS2R19P59542 299 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 DCAF7P61962 342 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 MELKQ14680 651 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 C1orf140Q5VVS0 124 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 C11orf88Q6PI97 169 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 GALNT16Q8N428 558 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 OR51A2Q8NGJ7 313 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 SLC41A2Q96JW4 573 aa17.29■□□□□ 0.36
VPS28-213ENST00000530983 GAL3ST1Q99999 423 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms