RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	ARMC4	Q5T2S8	1044 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	C16orf87	Q6PH81	154 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	C9orf139	Q6ZV77	190 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	SPATC1	Q76KD6	591 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	PTOV1	Q86YD1	416 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	NSMAF	Q92636	917 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	C4orf45	Q96LM5	186 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	PRSS27	Q9BQR3	290 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	OR2H1	Q9GZK4	316 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	PCDHAC1	Q9H158	963 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	IL20RA	Q9UHF4	553 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	MMP24	Q9Y5R2	645 aa		13.25	□□□□□ -0.29
LMNA-223	ENST00000515459	IGHV3OR16-10	A0A075B7F0	116 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	IGKV1D-43	A0A0B4J1Z2	117 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459		A0A1B0GUS0	222 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	GMNC	A6NCL1	334 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	GPANK1	O95872	356 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	MT-ND1	P03886	318 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	PPIAL4G	P0DN37	164 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	IGHV4-38-2	P0DP08	117 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	OMG	P23515	440 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	CD80	P33681	288 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	RBMX	P38159	391 aa	Known RBP	13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	MDH2	P40926	338 aa	Known RBP	13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	AQP2	P41181	271 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	SLC18A1	P54219	525 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	CD47	Q08722	323 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	PSG7	Q13046	419 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	CYP51A1	Q16850	503 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	ARL9	Q6T311	187 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	OR2Z1	Q8NG97	314 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	HDAC2	Q92769	488 aa	Known RBP	13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	NMD3	Q96D46	503 aa	Known RBP	13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	CPPED1	Q9BRF8	314 aa	Predicted RBP	13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	WNT5B	Q9H1J7	359 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	NANOG	Q9H9S0	305 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	NKIRAS1	Q9NYS0	192 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	PPP1R3C	Q9UQK1	317 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	TIMM10B	Q9Y5J6	103 aa		13.24	□□□□□ -0.29
LMNA-223	ENST00000515459	VWF	P04275	2813 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	ERLIN1	O75477	346 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	OR7A10	O76100	309 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	CST2	P09228	141 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	GSTM3	P21266	225 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	LAP3	P28838	519 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	PCBD1	P61457	104 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	RUNDC3A	Q59EK9	446 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	SLC25A47	Q6Q0C1	308 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	BTNL3	Q6UXE8	466 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	LRRN1	Q6UXK5	716 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	DLEU7	Q6UYE1	221 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	PATL1	Q86TB9	770 aa	Known RBP	13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	JAZF1	Q86VZ6	243 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	MUC20	Q8N307	709 aa	Predicted RBP	13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	PFN4	Q8NHR9	129 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	SLC26A7	Q8TE54	656 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	SIGLEC11	Q96RL6	698 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	MAN2C1	Q9NTJ4	1040 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.23	□□□□□ -0.29	6e-13	■□□□□ 8.7
LMNA-223	ENST00000515459	IL19	Q9UHD0	177 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	LRCH1	Q9Y2L9	728 aa		13.23	□□□□□ -0.29
LMNA-223	ENST00000515459		V9GYY5	206 aa	Predicted RBP	13.23	□□□□□ -0.29
LMNA-223	ENST00000515459	NPIPB13	A6NJU9	1138 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	NPIPB4	C9JG80	1138 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	SURF4	O15260	269 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	TGDS	O95455	350 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	PLAT	P00750	562 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	KNG1	P01042	644 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	GUCA1A	P43080	201 aa	Predicted RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	AGK	Q53H12	422 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	ZNF362	Q5T0B9	420 aa	Predicted RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	ZNF774	Q6NX45	483 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	C17orf107	Q6ZR85	190 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	SLC30A8	Q8IWU4	369 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	NPEPL1	Q8NDH3	523 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	MOSPD2	Q8NHP6	518 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	WFDC12	Q8WWY7	111 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	UPRT	Q96BW1	309 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	SGTB	Q96EQ0	304 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	THOC1	Q96FV9	657 aa	Known RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	SSBP3	Q9BWW4	388 aa	Predicted RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	TXNIP	Q9H3M7	391 aa		13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	NDRG4	Q9ULP0	352 aa	Known RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	SOX21	Q9Y651	276 aa	Predicted RBP	13.22	□□□□□ -0.29
LMNA-223	ENST00000515459	TRAV40	A0A0B4J280	105 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	CEACAM18	A8MTB9	384 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	HOXA3	O43365	443 aa	Predicted RBP	13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	ABHD16A	O95870	558 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	IGF2	P01344	180 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	WNT2	P09544	360 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	TSPAN19	P0C672	248 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	KITLG	P21583	273 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	TUBG1	P23258	451 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	CPT2	P23786	658 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	RBM34	P42696	430 aa	Known RBP	13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	IDH3A	P50213	366 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	PAX2	Q02962	417 aa		13.21	□□□□□ -0.29
LMNA-223	ENST00000515459	SRSF4	Q08170	494 aa	Known RBP	13.21	□□□□□ -0.29
LMNA-223	ENST00000515459		Q6ZR03	302 aa		13.21	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms