RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 PSG4Q00888 419 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 SPOCK1Q08629 439 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 AQP6Q13520 282 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 CRMP1Q14194 572 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 PABPC1L2AQ5JQF8 200 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 ZNF584Q8IVC4 421 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 IQCF1Q8N6M8 205 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 SLC30A7Q8NEW0 376 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 NUP37Q8NFH4 326 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 PROKR2Q8NFJ6 384 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 OR10H5Q8NGA6 315 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 NEUROG1Q92886 237 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 PLEKHA8Q96JA3 519 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 C9orf16Q9BUW7 83 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 NMNAT2Q9BZQ4 307 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 GRIP2Q9C0E4 1043 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 OR2H1Q9GZK4 316 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 LIME1Q9H400 295 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 EMC7Q9NPA0 242 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 BEX4Q9NWD9 120 aaPredicted RBP12.37□□□□□ -0.43
NUP54-216ENST00000514901 KCNG2Q9UJ96 466 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 PLEKHA6Q9Y2H5 1048 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 ORC6Q9Y5N6 252 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 MYO9AB2RTY4 2548 aa12.37□□□□□ -0.43
NUP54-216ENST00000514901 SURF4O15260 269 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 MPZL1O95297 269 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 BAG2O95816 211 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 HLA-DQA2P01906 255 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 SCG5P05408 212 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 DANCRP0C864 163 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 GAAP10253 952 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 COX5BP10606 129 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 NR4A1P22736 598 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 CALCRP30988 508 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 APOBEC3AP31941 199 aaPredicted RBP12.36□□□□□ -0.43
NUP54-216ENST00000514901 APLNRP35414 380 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 FABP6P51161 128 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 GALK2Q01415 458 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 TEKQ02763 1124 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 PTGES3Q15185 160 aaKnown RBP12.36□□□□□ -0.43
NUP54-216ENST00000514901 TBC1D28Q2M2D7 210 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 AGAP6Q5VW22 663 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 UGT2A3Q6UWM9 527 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 MYPOPQ86VE0 399 aaPredicted RBP12.36□□□□□ -0.43
NUP54-216ENST00000514901 FBXL14Q8N1E6 418 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 GJC3Q8NFK1 279 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 SLC26A10Q8NG04 563 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 MS4A3Q96HJ5 214 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 FOXN4Q96NZ1 517 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 CCL19Q99731 98 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 CDADC1Q9BWV3 514 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 CDH20Q9HBT6 801 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 USE1Q9NZ43 259 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 TMEFF2Q9UIK5 374 aaPredicted RBP12.36□□□□□ -0.43
NUP54-216ENST00000514901 POLR1DQ9Y2S0 133 aa12.36□□□□□ -0.43
NUP54-216ENST00000514901 USF3Q68DE3 2245 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 RAI1Q7Z5J4 1906 aaPredicted RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 FAM171A2A8MVW0 826 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 PRR23D1E9PI22 279 aaPredicted RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 MITFO75030 526 aaPredicted RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 SNAP29O95721 258 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 PRR23D2P0DMB1 279 aaPredicted RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 BMP4P12644 408 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 ZNF823P16415 610 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 SPI1P17947 270 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 STOMP27105 288 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 PCSK6P29122 969 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 FMO3P31513 532 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 PYCR1P32322 319 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 TTKP33981 857 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 GDI2P50395 445 aaKnown RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 ALDH3A2P51648 485 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 RPS23P62266 143 aaKnown RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 HGFACQ04756 655 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 DAG1Q14118 895 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 SNAPC1Q16533 368 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 UNQ6126/PRO20091Q6UXV3 157 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 CPEB3Q8NE35 698 aaKnown RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 TMEM171Q8WVE6 324 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 PTP4A1Q93096 173 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 CIB1Q99828 191 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 WNT5BQ9H1J7 359 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 FN3KQ9H479 309 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 CXorf56Q9H5V9 222 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 ZNF442Q9H7R0 627 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 CA10Q9NS85 328 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 ASH2LQ9UBL3 628 aa12.35□□□□□ -0.43
NUP54-216ENST00000514901 NDRG4Q9ULP0 352 aaKnown RBP12.35□□□□□ -0.43
NUP54-216ENST00000514901 ZAR1LA6NP61 321 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 SGCEO43556 437 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 TFP02787 698 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 ALPLP05186 524 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 APEX1P27695 318 aaKnown RBP12.34□□□□□ -0.43
NUP54-216ENST00000514901 GLRXP35754 106 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 RAD52P43351 418 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 RAD23AP54725 363 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 NKX6-1P78426 367 aaPredicted RBP12.34□□□□□ -0.43
NUP54-216ENST00000514901 DEFB113Q30KQ7 82 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 SLX4IPQ5VYV7 408 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 TMEM236Q5W0B7 351 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms