RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 OR5D18Q8NGL1 313 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 CCDC74AQ96AQ1 378 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 C3orf49Q96BT1 292 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 NAA11Q9BSU3 229 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 NYNRINQ9P2P1 1898 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 PRSS37A4D1T9 235 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 SULT2B1O00204 365 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 SLC17A2O00624 439 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF749O43361 778 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 NSA2O95478 260 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 CTHP32929 405 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 CDKN2AP42771 156 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 DHPSP49366 369 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF136P52737 540 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 TAS2R46P59540 309 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 PEA15Q15121 130 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 SMUG1Q53HV7 270 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 SFRP5Q5T4F7 317 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 MDGA2Q7Z553 956 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 NKX3-1Q99801 234 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 ZFP57Q9NU63 452 aa7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 PCYT1BQ9Y5K3 369 aaPredicted RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 PDCD11Q14690 1871 aaKnown RBP7.64□□□□□ -1.19
LIMCH1-216ENST00000512820 C2orf72A6NCS6 295 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 HSPB2A8KAH6 182 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 K7EPK0 472 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 HLA-DQB1P01920 261 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SLC25A1P53007 311 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 MESP2Q0VG99 397 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PLA2G7Q13093 441 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 HSPB2Q16082 182 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ARTNQ5T4W7 220 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PWWP2BQ6NUJ5 590 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 GLIPR1L1Q6UWM5 242 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM122BQ7Z309 247 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 GRINAQ7Z429 371 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 COMTD1Q86VU5 262 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM71E2Q8N5Q1 922 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF285Q96NJ3 590 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SULT4A1Q9BR01 284 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 LAT2Q9GZY6 243 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 NXF5Q9H1B4 397 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 GAREM1Q9H706 876 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 KCNJ16Q9NPI9 418 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 IGKV1-8A0A0C4DH67 115 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 RFPL4AA6NLU0 287 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 RFPL4AL1F8VTS6 287 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ADRA2AP08913 450 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ZGLP1P0C6A0 271 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CAV2P51636 162 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SNU13P55769 128 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 UBE2IP63279 158 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 NKAIN2Q5VXU1 208 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 H3F3CQ6NXT2 135 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 RAB11FIP2Q7L804 512 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 RSPRY1Q96DX4 576 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 KTI12Q96EK9 354 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 OR11A1Q9GZK7 315 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PLEK2Q9NYT0 353 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 RARRES3Q9UL19 164 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 B9D1Q9UPM9 204 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CSAG2Q9Y5P2 127 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PSME4Q14997 1843 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ICOSLGO75144 302 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 DIRAS3O95661 229 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PPT1P50897 306 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 MAP2K6P52564 334 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SNRPNP63162 240 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CORO6Q6QEF8 472 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 PPP1R1CQ8WVI7 109 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 NUDCD2Q8WVJ2 157 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SPTSSAQ969W0 71 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF707Q96C28 371 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 TRAF4Q9BUZ4 470 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 TINAGL1Q9GZM7 467 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 MMP25Q9NPA2 562 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 LOC285556D6RIA3 1793 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 NUDT21O43809 227 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CBX7O95931 251 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 LCATP04180 440 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CD38P28907 300 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 BLVRBP30043 206 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 CSNK1A1P48729 337 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SSBP1Q04837 148 aaKnown RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ZAR1Q86SH2 424 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 GRAMD2AQ8IUY3 354 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 LSMEM1Q8N8F7 131 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 OR1J2Q8NGS2 313 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 LRRC3BQ96PB8 259 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF629Q9UEG4 869 aaPredicted RBP7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 FBXO4Q9UKT5 387 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 SCN10AQ9Y5Y9 1956 aa7.63□□□□□ -1.19
LIMCH1-216ENST00000512820 TRBV11-1A0A0K0K1C0 115 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM230AA0A1W2PPH8 454 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 TLCD2A6NGC4 264 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 SSX5O60225 188 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 CHRM2P08172 466 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 SLC2A1P11166 492 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 ERGP11308 486 aa7.62□□□□□ -1.19
LIMCH1-216ENST00000512820 TBXA2RP21731 343 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms