RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 NOTCH4Q99466 2003 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 FITM1A5D6W6 292 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 MASP2O00187 686 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 CELA2AP08217 269 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 ZNF35P13682 527 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 ELK1P19419 428 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 CX3CR1P49238 355 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 SEC61A1P61619 476 aaKnown RBP12.72□□□□□ -0.37
TCOF1-207ENST00000504761 OR10K2Q6IF99 312 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 ZNF615Q8N8J6 731 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 HAVCR1Q96D42 359 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 MRI1Q9BV20 369 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 OBP2BQ9NPH6 170 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 KCNIP3Q9Y2W7 256 aa12.72□□□□□ -0.37
TCOF1-207ENST00000504761 RAB40ALP0C0E4 278 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 ETFDHQ16134 617 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 FXNQ16595 210 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 ANGPTL5Q86XS5 388 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 RAB40AQ8WXH6 277 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 DVL3Q92997 716 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-207ENST00000504761 AICDAQ9GZX7 198 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 C11orf54Q9H0W9 315 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-207ENST00000504761 PRH1P02810 166 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 CALCBP10092 127 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 SRP9P49458 86 aaKnown RBP12.71□□□□□ -0.37
TCOF1-207ENST00000504761 THEM4Q5T1C6 240 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 WDR5BQ86VZ2 330 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 OR2G2Q8NGZ5 317 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 TXNDC15Q96J42 360 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 TMEM59Q9BXS4 323 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 OCEL1Q9H607 264 aa12.71□□□□□ -0.37
TCOF1-207ENST00000504761 MRPS28Q9Y2Q9 187 aaKnown RBP12.71□□□□□ -0.37
TCOF1-207ENST00000504761 CEP350Q5VT06 3117 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 TBX6O95947 436 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-207ENST00000504761 UBCP0CG48 685 aaKnown RBP12.71□□□□□ -0.38
TCOF1-207ENST00000504761 AADACL4Q5VUY2 407 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 LYSMD2Q8IV50 215 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 BEST3Q8N1M1 668 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 SYS1Q8N2H4 156 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 FOXRED1Q96CU9 486 aaPredicted RBP12.71□□□□□ -0.38
TCOF1-207ENST00000504761 IP6K3Q96PC2 410 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 CLCC1Q96S66 551 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 BANF2Q9H503 90 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 DUSP13Q9UII6 198 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 HIF3AQ9Y2N7 669 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 HDGFL3Q9Y3E1 203 aa12.71□□□□□ -0.38
TCOF1-207ENST00000504761 ZNF814B7Z6K7 855 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 DVL2O14641 736 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 CD79BP40259 229 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 MAP2K6P52564 334 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 DERL3Q96Q80 235 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 NIPAL2Q9H841 368 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 KANTRA0A1W2PQU2 76 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 ZSCAN5BA6NJL1 495 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 MPZL1O95297 269 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 FKBP2P26885 142 aaKnown RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 CEBPGP53567 150 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 VAMP2P63027 116 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 SSX1Q16384 188 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 UBE2NLQ5JXB2 153 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 OR2S2Q9NQN1 319 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 MAN2C1Q9NTJ4 1040 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 ZFHX2Q9C0A1 2572 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 TCF20Q9UGU0 1960 aaKnown RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 OR14I1A6ND48 311 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 E9PI62 339 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 ARPC3O15145 178 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 RGS19P49795 217 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 ATP1B3P54709 279 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 SUMO3P55854 103 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 DSCR4P56555 118 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 SLC17A1Q14916 467 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 CNN3Q15417 329 aaKnown RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 TIGD3Q6B0B8 471 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 CD300LDQ6UXZ3 194 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 TMPRSS7Q7RTY8 843 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 BTLAQ7Z6A9 289 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 MKXQ8IYA7 352 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 IL1F10Q8WWZ1 152 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 C11orf40Q8WZ69 217 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 PIGLQ9Y2B2 252 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 TRABD2BA6NFA1 517 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 EIF3IQ13347 325 aaKnown RBP12.7□□□□□ -0.38
TCOF1-207ENST00000504761 OR52N5Q8NH56 324 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 PELI1Q96FA3 418 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 NOX3Q9HBY0 568 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 GPR84Q9NQS5 396 aa12.7□□□□□ -0.38
TCOF1-207ENST00000504761 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-207ENST00000504761 DHHO43323 396 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 UBL3O95164 117 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 AKAIN1P0CW23 69 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 SMIM10L1P0DMW3 83 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 CTLA4P16410 223 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 BLVRBP30043 206 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-207ENST00000504761 SSPNQ14714 243 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 WDR88Q6ZMY6 472 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 OR10K1Q8NGX5 313 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 ZNF721Q8TF20 911 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 PTP4A1Q93096 173 aa12.69□□□□□ -0.38
TCOF1-207ENST00000504761 SMIM10Q96HG1 83 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms