RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TTMPQ5BVD1 217 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 OR5M10Q6IEU7 315 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 MFSD12Q6NUT3 480 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 NOXRED1Q6NXP6 359 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 EMBQ6PCB8 327 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 PAQR6Q6TCH4 344 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 UNQ6126/PRO20091Q6UXV3 157 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 EIF3MQ7L2H7 374 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 MARCH3Q86UD3 253 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 TUSC5Q8IXB3 177 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF786Q8N393 782 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 BPIFB2Q8N4F0 458 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 MREGQ8N565 214 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF433Q8N7K0 673 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 FAM71CQ8NEG0 241 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 OR4C3Q8NH37 302 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ABHD3Q8WU67 409 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 RAB40AQ8WXH6 277 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 OR5P2Q8WZ92 322 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 EXOSC8Q96B26 276 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 DDIT4LQ96D03 193 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GIMAP5Q96F15 307 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 PPP3R2Q96LZ3 170 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 COG8Q96MW5 612 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF385AQ96PM9 386 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 NAA11Q9BSU3 229 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF416Q9BWM5 594 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 LINC00470Q9BZP3 86 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GLIPR2Q9H4G4 154 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF385DQ9H6B1 395 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ARMC7Q9H6L4 198 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 NTN4Q9HB63 628 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 LPAR2Q9HBW0 351 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 A4GALTQ9NPC4 353 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 SLC52A3Q9NQ40 469 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 CYSLTR2Q9NS75 346 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ACER3Q9NUN7 267 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 EXD2Q9NVH0 621 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ARGLU1Q9NWB6 273 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 ATP6V1HQ9UI12 483 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ZNF346Q9UL40 294 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 FAF1Q9UNN5 650 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 NOSIPQ9Y314 301 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 GRIP1Q9Y3R0 1128 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 HERC1Q15751 4861 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 PRR14LQ5THK1 2151 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 FREM3P0C091 2139 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 EXPH5Q8NEV8 1989 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 DSPPQ9NZW4 1301 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 LOC105371242A0A075B767 164 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 A0A087WYN8 130 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CIB4A0PJX0 185 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 SH2D7A6NKC9 451 aaPredicted RBP3.31□□□□□ -1.88
USP54-217ENST00000498213 E7EQL1 145 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 RPL36A-HNRNPH2H7BZ11 118 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 SULT2B1O00204 365 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 TNFSF11O14788 317 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 RAMP1O60894 148 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 GLRA3O75311 464 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ERLIN1O75477 346 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CRCPO75575 148 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 OR4F21O95013 312 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NDUFB4O95168 129 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 IGKV3-15P01624 115 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 IGLV1-44P01699 117 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 UBL4AP11441 157 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 IGHV1-2P23083 117 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 TUBG1P23258 451 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 SLC1A3P43003 542 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CDH15P55291 814 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 BPIFB3P59826 476 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 LTB4RQ15722 352 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 GABRA6Q16445 453 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 PCGF3Q3KNV8 242 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 TMEM176BQ3YBM2 270 aaPredicted RBP3.31□□□□□ -1.88
USP54-217ENST00000498213 CFAP157Q5JU67 520 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ATAD3BQ5T9A4 648 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 FAHD2BQ6P2I3 314 aaPredicted RBP3.31□□□□□ -1.88
USP54-217ENST00000498213 TMEM107Q6UX40 140 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 APOOLQ6UXV4 268 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 NET1Q7Z628 596 aaPredicted RBP3.31□□□□□ -1.88
USP54-217ENST00000498213 KRT77Q7Z794 578 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 TBC1D26Q86UD7 250 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZNF619Q8N2I2 560 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 PARP16Q8N5Y8 322 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZNF114Q8NC26 417 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 OR6S1Q8NH40 331 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 GPR119Q8TDV5 335 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZNF75CPQ92670 426 aaPredicted RBP3.31□□□□□ -1.88
USP54-217ENST00000498213 FAHD2AQ96GK7 314 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 PAFAH2Q99487 392 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 FMO2Q99518 471 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 CITED1Q99966 193 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 BPESC1Q9GZL8 116 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 ZNF350Q9GZX5 532 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 C1orf198Q9H425 327 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 COQ10BQ9H8M1 238 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 C12orf10Q9HB07 376 aa3.31□□□□□ -1.88
USP54-217ENST00000498213 SLC17A5Q9NRA2 495 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms