RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 DHHO43323 396 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 HNRNPCL1O60812 293 aaKnown RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 PTHP01270 115 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 MMP7P09237 267 aaPredicted RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 HNRNPCL4P0DMR1 293 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 T-ENOLP0DO92 83 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 CALB2P22676 271 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 PDCD1Q15116 288 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 ALG10BQ5I7T1 473 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 MBNL2Q5VZF2 373 aaKnown RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 NANOGP8Q6NSW7 305 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 LRRN1Q6UXK5 716 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 SLC16A14Q7RTX9 510 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 DPPA2Q7Z7J5 298 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 COMTD1Q86VU5 262 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 ZNF283Q8N7M2 679 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 RBM15BQ8NDT2 890 aaKnown RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 OR6X1Q8NH79 312 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 SLC25A40Q8TBP6 338 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 KLF14Q8TD94 323 aaPredicted RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 ARHGDIGQ99819 225 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 OR2J1Q9GZK6 312 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 NANOGQ9H9S0 305 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 EFCAB1Q9HAE3 211 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 MSL2Q9HCI7 577 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 TCF7L1Q9HCS4 588 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 CYSLTR2Q9NS75 346 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 GMPR2Q9P2T1 348 aaKnown RBP13.79□□□□□ -0.2
VIM-208ENST00000497849 ASH2LQ9UBL3 628 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 ZDHHC8Q9ULC8 765 aa13.79□□□□□ -0.2
VIM-208ENST00000497849 ENTPD5O75356 428 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 WNT2P09544 360 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 CCNOP22674 350 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 NUDT2P50583 147 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 MNAT1P51948 309 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 DSTNP60981 165 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 TNFAIP6P98066 277 aaPredicted RBP13.78□□□□□ -0.2
VIM-208ENST00000497849 PLP2Q04941 152 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 RGNQ15493 299 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 RABL3Q5HYI8 236 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 COQ5Q5HYK3 327 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 ZNF774Q6NX45 483 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 BTNL3Q6UXE8 466 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 TMEM86BQ8N661 226 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 PCYOX1LQ8NBM8 494 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 DNAJA4Q8WW22 397 aaPredicted RBP13.78□□□□□ -0.2
VIM-208ENST00000497849 NOX4Q9NPH5 578 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 LRCH1Q9Y2L9 728 aa13.78□□□□□ -0.2
VIM-208ENST00000497849 IGHV2-70DA0A0C4DH43 119 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 CEACAM18A8MTB9 384 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 C11orf98E9PRG8 122 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 MELTFP08582 738 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 APLNRP35414 380 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 LIPAP38571 399 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 RASSF2P50749 326 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 PABPC1L2AQ5JQF8 200 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 SAMD5Q5TGI4 173 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 ULK3Q6PHR2 472 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 SLC35D2Q76EJ3 337 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 RAB40AQ8WXH6 277 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 MAL2Q969L2 176 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 POM121L2Q96KW2 1035 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 EPYCQ99645 322 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 SLC30A2Q9BRI3 323 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 SSBP3Q9BWW4 388 aaPredicted RBP13.77□□□□□ -0.21
VIM-208ENST00000497849 GID8Q9NWU2 228 aa13.77□□□□□ -0.21
VIM-208ENST00000497849 CGGBP1Q9UFW8 167 aaPredicted RBP13.77□□□□□ -0.21
VIM-208ENST00000497849 LOC100509620A0A075B734 347 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 EVPLLA8MZ36 301 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 H0YL77 283 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 QDPRP09417 244 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 PGA4P0DJD7 388 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 PGA3P0DJD8 388 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 ADORA3P0DMS8 318 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 THRBP10828 461 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 GPX2P18283 190 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 STOMP27105 288 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 MDH2P40926 338 aaKnown RBP13.76□□□□□ -0.21
VIM-208ENST00000497849 RPL15P61313 204 aaKnown RBP13.76□□□□□ -0.21
VIM-208ENST00000497849 NCALDP61601 193 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 NRN1LQ496H8 165 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 ZNF620Q6ZNG0 422 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 RFPL4BQ6ZWI9 263 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 LRRC18Q8N456 261 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 ZNF566Q969W8 418 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 SLC47A1Q96FL8 570 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 SLC25A44Q96H78 314 aaPredicted RBP13.76□□□□□ -0.21
VIM-208ENST00000497849 CACYBPQ9HB71 228 aaKnown RBP13.76□□□□□ -0.21
VIM-208ENST00000497849 BCL2L10Q9HD36 194 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.76□□□□□ -0.21
VIM-208ENST00000497849 CMTM6Q9NX76 183 aa13.76□□□□□ -0.21
VIM-208ENST00000497849 DNAH3Q8TD57 4116 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 TET2Q6N021 2002 aaPredicted RBP13.75□□□□□ -0.21
VIM-208ENST00000497849 KIR2DS1A0A191URI9 304 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 C5orf63A6NC05 138 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 B2RBV5 119 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 SLC6A2P23975 617 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 GZMMP51124 257 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 PSME3P61289 254 aa13.75□□□□□ -0.21
VIM-208ENST00000497849 MXRA7P84157 204 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms