RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 LRRC61Q9BV99 259 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 TGIF2Q9GZN2 237 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 PPP1R3EQ9H7J1 279 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 ZFP57Q9NU63 452 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 PLEK2Q9NYT0 353 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 MGMTP16455 207 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 C3orf33Q6P1S2 294 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 ABHD12BQ7Z5M8 362 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 EVA1AQ9H8M9 152 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 VSX1Q9NZR4 365 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 HHLA2Q9UM44 414 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 F10P00742 488 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 SERPINA5P05154 406 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 LPLP06858 475 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 CD53P19397 219 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 CLDN6P56747 220 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 CDK5Q00535 292 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 ELAVL1Q15717 326 aaKnown RBP14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 BCORP1Q8N888 145 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 TOMM40LQ969M1 308 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 FAM3DQ96BQ1 224 aa14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 SDHCQ99643 169 aaPredicted RBP14.86□□□□□ -0.03
CCDC88B-209ENST00000494080 FITM1A5D6W6 292 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 MCRIP1C9JLW8 97 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CELA2BP08218 269 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CD80P33681 288 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 RAG2P55895 527 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 PPP1CAP62136 330 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 DPY19L2P2Q6ZN68 376 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 TRAPPC6BQ86SZ2 158 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 NAA40Q86UY6 237 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 OR4Q3Q8NH05 313 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 HOXB13Q92826 284 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CCDC74AQ96AQ1 378 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 MRPS2Q9Y399 296 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SLC22A23A1A5C7 686 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 K7EQS6 105 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 S100A8P05109 93 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM225BP0DP42 221 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SMAD4Q13485 552 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CAMK2DQ13557 499 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF425Q6IV72 752 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF704Q6ZNC4 412 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ACOT7LQ6ZUV0 252 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SUMF2Q8NBJ7 301 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 OR52H1Q8NGJ2 320 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SLAMF9Q96A28 289 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 RNF170Q96K19 258 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SORCS2Q96PQ0 1159 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 LCATP04180 440 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 RPS27P42677 84 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CAV2P51636 162 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 OR2B8PP59922 312 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 EEF1A1P68104 462 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 VN1R4Q7Z5H5 301 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF100Q8IYN0 542 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 PLPP7Q8NBV4 271 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 FNDC9Q8TBE3 224 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SLC2A12Q8TD20 617 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 YIPF5Q969M3 257 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SMIM19Q96E16 107 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 GPR137Q96N19 417 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 NXF5Q9H1B4 397 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 STEAP1Q9UHE8 339 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 A0A1W2PS29 197 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF850A8MQ14 1090 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF705GA8MUZ8 300 aaPredicted RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ALDH3B1P43353 468 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 POLR2HP52434 150 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ALKBH1Q13686 389 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 CDK5R1Q15078 307 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF687Q8N1G0 1237 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 BPIFCQ8NFQ6 507 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 PARP12Q9H0J9 701 aaKnown RBP14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 ZNF160Q9HCG1 818 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SVILO95425 2214 aa14.85□□□□□ -0.03
CCDC88B-209ENST00000494080 SLC34A2O95436 690 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 HIST1H1CP16403 213 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 CNR1P21554 472 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 LIPNQ5VXI9 398 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 LINC00346Q8IVM7 164 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 TSSK2Q96PF2 358 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 USB1Q9BQ65 265 aaKnown RBP14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 ANKRD10Q9NXR5 420 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 HIF3AQ9Y2N7 669 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 IDSB3KWA1 339 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 CD3DP04234 171 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 TMEM71Q6P5X7 295 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 OPN5Q6U736 354 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 KCNRGQ8N5I3 272 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 STT3BQ8TCJ2 826 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 CNTNAP3Q9BZ76 1288 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 GPR55Q9Y2T6 319 aaPredicted RBP14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 TRAV36DV7A0A075B6V5 113 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 FFAR1O14842 300 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 S100PP25815 95 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 HTR2CP28335 458 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 NDUFA6P56556 154 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 C17orf67Q0P5P2 114 aa14.84□□□□□ -0.03
CCDC88B-209ENST00000494080 OTPQ5XKR4 325 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms