RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 NDUFS8O00217 210 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 PTP4A3O75365 173 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 PTHP01270 115 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 CD14P08571 375 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 RHCEP18577 417 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 STOMP27105 288 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 IL2RGP31785 369 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 RPS23P62266 143 aaKnown RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 MXRA7P84157 204 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 GLO1Q04760 184 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 DBPQ10586 325 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 DGCR6Q14129 220 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 KRT72Q14CN4 511 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 TRIP10Q15642 601 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 NKPD1Q17RQ9 610 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 NRN1LQ496H8 165 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 ELFN2Q5R3F8 820 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SPATA46Q5T0L3 261 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 FAM27BQ5VT28 67 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF774Q6NX45 483 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 UGT2A3Q6UWM9 527 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 IL17RELQ6ZVW7 336 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 DPPA2Q7Z7J5 298 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 DEFB107AQ8IZN7 70 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF786Q8N393 782 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 OR1J1Q8NGS3 322 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SYNPRQ8TBG9 265 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 C11orf40Q8WZ69 217 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 GTF3AQ92664 365 aaKnown RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 PYURFQ96I23 114 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 WNT5BQ9H1J7 359 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 LRMDAQ9H2I8 198 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 MS4A5Q9H3V2 200 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 GORASP2Q9H8Y8 452 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 CHODLQ9H9P2 273 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SMURF2Q9HAU4 748 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SRA1Q9HD15 236 aaKnown RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 MYOZ1Q9NP98 299 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 EMC7Q9NPA0 242 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 CD300AQ9UGN4 299 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 TAGLN3Q9UI15 199 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 FBXO9Q9UK97 447 aaPredicted RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SAMD4AQ9UPU9 718 aaKnown RBP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SIGLEC7Q9Y286 467 aa9.13□□□□□ -0.95
COL6A3-214ENST00000493608 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.13□□□□□ -0.95
COL6A3-214ENST00000493608 SCO2A0A1W2PP80 73 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 SLC22A23A1A5C7 686 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 A6NIZ1 184 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ARPC2O15144 300 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 LMX1BO60663 402 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 NCR1O76036 304 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 TGFAP01135 160 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 CST2P09228 141 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 NR2C1P13056 603 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 HSD17B1P14061 328 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF250P15622 560 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF23P17027 643 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 GIFP27352 417 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 WNT5AP41221 380 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 GUCA1AP43080 201 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-214ENST00000493608 RAD52P43351 418 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 MAGEB1P43366 347 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 OMPP47874 163 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 GZMKP49863 264 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 KLF3P57682 345 aaPredicted RBP9.12□□□□□ -0.95
COL6A3-214ENST00000493608 FXYD6P3P58550 94 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 RAP1BP61224 184 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 RAP1AP62834 184 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 SPIBQ01892 262 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ENDOGQ14249 297 aaKnown RBP9.12□□□□□ -0.95
COL6A3-214ENST00000493608 CHRFAM7AQ494W8 412 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ANKDD1AQ495B1 522 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 MESTQ5EB52 335 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 FAM205BPQ63HN1 556 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF101Q8IZC7 436 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 PGAM4Q8N0Y7 254 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF540Q8NDQ6 660 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 YIPF5Q969M3 257 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 RSRC1Q96IZ7 334 aaKnown RBP9.12□□□□□ -0.95
COL6A3-214ENST00000493608 POM121L2Q96KW2 1035 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF570Q96NI8 536 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 SNX18Q96RF0 628 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 GPA33Q99795 319 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ZNF416Q9BWM5 594 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 OR2H1Q9GZK4 316 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 C1orf198Q9H425 327 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 ANKRD19PQ9H560 264 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 NARFLQ9H6Q4 476 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 AURKCQ9UQB9 309 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 TMEM5Q9Y2B1 443 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 IER3IP1Q9Y5U9 82 aa9.12□□□□□ -0.95
COL6A3-214ENST00000493608 PRSS37A4D1T9 235 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 UNC119BA6NIH7 251 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 F8W735 103 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-214ENST00000493608 SOCS2O14508 198 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 XKRYO14609 159 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 SLC16A7O60669 478 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 DCTN3O75935 186 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 NDUFB2O95178 105 aa9.11□□□□□ -0.95
COL6A3-214ENST00000493608 GADD45GO95257 159 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms