RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SYT4Q9H2B2 425 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 MUC13Q9H3R2 512 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 EMC7Q9NPA0 242 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 IL1RAPQ9NPH3 570 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 SLCO1C1Q9NYB5 712 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 TAAR3PQ9P1P4 343 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 ACTR3BQ9P1U1 418 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 IER3IP1Q9Y5U9 82 aa12.95□□□□□ -0.34
USP39-217ENST00000491659 IGLV3-9A0A075B6K5 115 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 KHDRBS3O75525 346 aaKnown RBP12.94□□□□□ -0.34
USP39-217ENST00000491659 IGHV4-31P0DP07 118 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 NAT2P11245 290 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 ZNF250P15622 560 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 CTLA4P16410 223 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 ATP6V1B2P21281 511 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 FPR3P25089 353 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 GIFP27352 417 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 SLC6A6P31641 620 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 FXYD6P3P58550 94 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 SCRN3Q0VDG4 424 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 ENDOGQ14249 297 aaKnown RBP12.94□□□□□ -0.34
USP39-217ENST00000491659 ALKBH6Q3KRA9 238 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 DNM1P34Q6PK57 102 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 ZNF771Q7L3S4 317 aaPredicted RBP12.94□□□□□ -0.34
USP39-217ENST00000491659 ZER1Q7Z7L7 766 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 POM121L2Q96KW2 1035 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 WNT5BQ9H1J7 359 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 OR52D1Q9H346 318 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 RERGLQ9H628 205 aa12.94□□□□□ -0.34
USP39-217ENST00000491659 VSX1Q9NZR4 365 aaPredicted RBP12.94□□□□□ -0.34
USP39-217ENST00000491659 NDRG4Q9ULP0 352 aaKnown RBP12.94□□□□□ -0.34
USP39-217ENST00000491659 IGHV4-61A0A0C4DH41 118 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 DOK2O60496 412 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 SLC16A7O60669 478 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 KRT36O76013 467 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 PPP1R3DO95685 299 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 CLPTM1O96005 669 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 MT-ND5P03915 603 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 ZNF23P17027 643 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 GCH1P30793 250 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 CHN2P52757 468 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 MOGQ16653 247 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 ZNF774Q6NX45 483 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 TMEM154Q6P9G4 183 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 JAZF1Q86VZ6 243 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 DHFR2Q86XF0 187 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 GLB1L2Q8IW92 636 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 C1orf174Q8IYL3 243 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 ABHD4Q8TB40 342 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 ERMAPQ96PL5 475 aaPredicted RBP12.93□□□□□ -0.34
USP39-217ENST00000491659 GPA33Q99795 319 aa12.93□□□□□ -0.34
USP39-217ENST00000491659 PRPF19Q9UMS4 504 aaKnown RBP12.93□□□□□ -0.34
USP39-217ENST00000491659 LOC100509620A0A075B734 347 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 IMPA2O14732 288 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 TXNDC12O95881 172 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 CRABP1P29762 137 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 WNT5AP41221 380 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 ARHGDIAP52565 204 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 GLO1Q04760 184 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 AQP6Q13520 282 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 RFX4Q33E94 735 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 PCGF3Q3KNV8 242 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 ZNF718Q3SXZ3 478 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 SPATA46Q5T0L3 261 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 LCN8Q6JVE9 175 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 ARL9Q6T311 187 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 UGT2A3Q6UWM9 527 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 RINLQ6ZS11 566 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 PTCHD4Q6ZW05 846 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 RFPL4BQ6ZWI9 263 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 ZNF101Q8IZC7 436 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 LINC00471Q8N535 108 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 GNPDA2Q8TDQ7 276 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 RDH5Q92781 318 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 IFT27Q9BW83 186 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 CHODLQ9H9P2 273 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 ELOVL3Q9HB03 270 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 HINT3Q9NQE9 182 aaKnown RBP12.92□□□□□ -0.34
USP39-217ENST00000491659 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.92□□□□□ -0.34
USP39-217ENST00000491659 COA3Q9Y2R0 106 aaPredicted RBP12.92□□□□□ -0.34
USP39-217ENST00000491659 POLR1DQ9Y2S0 133 aa12.92□□□□□ -0.34
USP39-217ENST00000491659 RTTNQ86VV8 2226 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 C17orf100A8MU93 164 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 LYNX1G3V0Z9 82 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 TNFRSF11BO00300 401 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 SGCEO43556 437 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 NCR1O76036 304 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 ABHD16AO95870 558 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 RENP00797 406 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 HPXP02790 462 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 SCG5P05408 212 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 LYNX1P0DP58 116 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 COX5BP10606 129 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 ACHEP22303 614 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 NOS3P29474 1203 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 MAGEA2P43356 314 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 HTR5AP47898 357 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 CENPAP49450 140 aa12.91□□□□□ -0.34
USP39-217ENST00000491659 LSM6P62312 80 aaKnown RBP12.91□□□□□ -0.34
USP39-217ENST00000491659 TSPAN31Q12999 210 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms