RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 BDKRB1P46663 353 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 GSK3BP49841 420 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 EMDP50402 254 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RPL14P50914 215 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ARHGDIAP52565 204 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 AP1S2P56377 157 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TNFRSF17Q02223 184 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RGS1Q08116 209 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 CD300CQ08708 224 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 LY6DQ14210 128 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ATXN7L3Q14CW9 347 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 PDK3Q15120 406 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SYPL1Q16563 259 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 PCK2Q16822 640 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM44Q2T9K0 475 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 C14orf28Q4W4Y0 310 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TPRG1LQ5T0D9 272 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 LINC00242Q5T6M2 205 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 REP15Q6BDI9 236 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 CGB2Q6NT52 195 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 DOK6Q6PKX4 331 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 REG3GQ6UW15 175 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 Q6ZSR6 202 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 FRA10AC1Q70Z53 315 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF329Q86UD4 541 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 UBQLNLQ8IYU4 475 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TCAIMQ8N3R3 496 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 CCNYL1Q8N7R7 359 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 PRSS33Q8NF86 280 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 MIPOL1Q8TD10 442 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 OR1E3Q8WZA6 343 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TFGQ92734 400 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TAF15Q92804 592 aaKnown RBP eCLIP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 RAD51AP1Q96B01 352 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 NTNG2Q96CW9 530 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SDSLQ96GA7 329 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 C18orf12Q96KH6 178 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 FOPNLQ96NB1 174 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ATF6BQ99941 703 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SIKE1Q9BRV8 207 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 ILKAPQ9H0C8 392 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 OR52A5Q9H2C5 316 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 JPT2Q9H910 190 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 EML4Q9HC35 981 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 MRPL40Q9NQ50 206 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 MRPL39Q9NYK5 338 aaKnown RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 C6orf203Q9P0P8 240 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 MLXQ9UH92 298 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 CA5BQ9Y2D0 317 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 PCYT1BQ9Y5K3 369 aaPredicted RBP3.24□□□□□ -1.89
PTCD3-216ENST00000487043 SPACA6W5XKT8 324 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 BDP1A6H8Y1 2624 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 FER1L5A0AVI2 2057 aa3.24□□□□□ -1.89
PTCD3-216ENST00000487043 TRIOO75962 3097 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 A0A0G2JND7 137 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TRBV7-9A0A0J9YWB2 115 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 A0A1B0GTH9 108 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 UBFD1O14562 309 aaKnown RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ARPC3O15145 178 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 HDAC3O15379 428 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 RPN2P04844 631 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF44P15621 663 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 SDC1P18827 310 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 BCKDHBP21953 392 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CALB2P22676 271 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 RPL4P36578 427 aaKnown RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 HSD17B2P37059 387 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 GNPDA1P46926 289 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 AQP5P55064 265 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 PKNOX1P55347 436 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 IRX1P78414 480 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CSTF1Q05048 431 aaKnown RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 FZD2Q14332 565 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 GRB7Q14451 532 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 C18orf21Q32NC0 220 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CCSMST1Q4G0I0 132 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 GGTA1PQ4G0N0 100 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 METTL21CQ5VZV1 264 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM225Q6GV28 225 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ACSM5Q6NUN0 579 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 AGTRAPQ6RW13 159 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 EPGNQ6UW88 154 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 C6orf89Q6UWU4 347 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 Q6ZTC4 211 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 C16orf62Q7Z3J2 963 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 CEACAM19Q7Z692 300 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 TMEM123Q8N131 208 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 SLC22A18ASQ8N1D0 253 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ARL14Q8N4G2 192 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 DEFB119Q8N690 84 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ZSCAN4Q8NAM6 433 aaPredicted RBP3.23□□□□□ -1.89
PTCD3-216ENST00000487043 BEST4Q8NFU0 473 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 STXBP6Q8NFX7 210 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR8J1Q8NGP2 316 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR13C2Q8NGS9 318 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR9A1PQ8NGU1 263 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR4Q3Q8NH05 313 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 OR5K2Q8NHB8 316 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 ZNF671Q8TAW3 534 aa3.23□□□□□ -1.89
PTCD3-216ENST00000487043 SETD7Q8WTS6 366 aaKnown RBP3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms