RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 V9GYH0 126 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 A0A1W2PPV9 198 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 LSSP48449 732 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 C21orf58P58505 322 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 TAS2R19P59542 299 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 RPL27P61353 136 aaKnown RBP10.03□□□□□ -0.8
HDAC6-228ENST00000486227 DGCR2P98153 550 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 BDH1Q02338 343 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 IL10RAQ13651 578 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 NLRC3Q7RTR2 1065 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 UBE3DQ7Z6J8 389 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 CSNK2A3Q8NEV1 391 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 OR1N1Q8NGS0 311 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 SLC5A7Q9GZV3 580 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 RPS10P5Q9NQ39 176 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 NRG2O14511 850 aaPredicted RBP10.03□□□□□ -0.8
HDAC6-228ENST00000486227 SURF4O15260 269 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 ACSM4P0C7M7 580 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 SPI1P17947 270 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 CD53P19397 219 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 GPR85P60893 370 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 ACKR1Q16570 336 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 SLC16A9Q7RTY1 509 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 OR5H2Q8NGV7 314 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 MARC2Q969Z3 335 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 CALHM2Q9HA72 323 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 LIN7BQ9HAP6 207 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 LRFN1Q9P244 771 aa10.03□□□□□ -0.8
HDAC6-228ENST00000486227 IGHV1OR21-1A0A087WYE8 117 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 TXNL1O43396 289 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 LILRB5O75023 590 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 NKX2-2O95096 273 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 TSPAN15O95858 294 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 SERPINA5P05154 406 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 RPL18Q07020 188 aaKnown RBP10.02□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF616Q08AN1 781 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 SRSF5Q13243 272 aaKnown RBP10.02□□□□□ -0.8
HDAC6-228ENST00000486227 PEA15Q15121 130 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 ZNF585AQ6P3V2 769 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 ABHD5Q8WTS1 349 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 ARHGDIGQ99819 225 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 PRRT1Q99946 306 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 NUDT9Q9BW91 350 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 SMOC1Q9H4F8 434 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 IFT22Q9H7X7 185 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 ENY2Q9NPA8 101 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 RHBDD3Q9Y3P4 386 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 TMEM184BQ9Y519 407 aaPredicted RBP10.02□□□□□ -0.8
HDAC6-228ENST00000486227 GVINP1Q7Z2Y8 2422 aa10.02□□□□□ -0.8
HDAC6-228ENST00000486227 EPOPA6NHQ4 379 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 GABARAPH6UMI1 98 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 SSX5O60225 188 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 FADS1O60427 444 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 RGS19P49795 217 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PCBP3P57721 371 aaKnown RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 MEF2DQ14814 521 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 CLRN3Q8NCR9 226 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 C10orf90Q96M02 699 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 FAM117AQ9C073 453 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 UNKLQ9H9P5 680 aaKnown RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 KLHL13Q9P2N7 655 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF346Q9UL40 294 aaKnown RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PRELID3BQ9Y3B1 194 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PSME4Q14997 1843 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 A0A1W2PNR3 127 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 TNFSF14O43557 240 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 STK17BO94768 372 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 FOLR1P15328 257 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 APOBEC1P41238 236 aaKnown RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 RFX2P48378 723 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 TAS2R31P59538 309 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 COX15Q7KZN9 410 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 SFTPA2Q8IWL1 248 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ACBD4Q8NC06 268 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 SLC25A43Q8WUT9 341 aaPredicted RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ST8SIA2Q92186 375 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 UPRTQ96BW1 309 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 FOXRED1Q96CU9 486 aaPredicted RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 CLEC1BQ9P126 229 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 RGPD3A6NKT7 1758 aaPredicted RBP10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PCM1Q15154 2024 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 A0A1B0GUH1 482 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 TMEM82A0PJX8 343 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 P2RY10O00398 339 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 OR2J2O76002 312 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 DIO1P49895 249 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PNLIPRP2P54317 469 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF628Q5EBL2 1059 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 OTPQ5XKR4 325 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 C12orf73Q69YU5 71 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ZNF529Q6P280 563 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 DCXRQ7Z4W1 244 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 OR1L3Q8NH93 324 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 SARAFQ96BY9 339 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 ST6GALNAC5Q9BVH7 336 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 PTPRFP10586 1907 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 MIA3Q5JRA6 1907 aa10.02□□□□□ -0.81
HDAC6-228ENST00000486227 LINC00862A6NCI5 91 aa10.01□□□□□ -0.81
HDAC6-228ENST00000486227 SHOXO15266 292 aa10.01□□□□□ -0.81
HDAC6-228ENST00000486227 SCGNO76038 276 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms