RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SIGLEC7Q9Y286 467 aa1.17□□□□□ -2.22
VPS50-216ENST00000484954 MRPS7Q9Y2R9 242 aaKnown RBP1.17□□□□□ -2.22
VPS50-216ENST00000484954 N6AMT1Q9Y5N5 214 aa1.17□□□□□ -2.22
VPS50-216ENST00000484954 SORL1Q92673 2214 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 TRAV26-1A0A087WT03 109 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 F6UB75 175 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 POLR1CO15160 346 aaPredicted RBP1.16□□□□□ -2.22
VPS50-216ENST00000484954 GMFGO60234 142 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 SCGNO76038 276 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 ERLIN2O94905 339 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 HLA-DQB1P01920 261 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 GLAP06280 429 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 DTYMKP23919 212 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 CASP14P31944 242 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 TNFSF9P41273 254 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 PSMD8P48556 350 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 GBX2P52951 348 aaPredicted RBP1.16□□□□□ -2.22
VPS50-216ENST00000484954 ARHGAP19Q14CB8 494 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 EXOC3L2Q2M3D2 409 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 KRTAP13-4Q3LI77 160 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 CFAP157Q5JU67 520 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 METTL21CQ5VZV1 264 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 SPINT4Q6UDR6 99 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 SLC16A13Q7RTY0 426 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 ZNF664Q8N3J9 261 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 SHC3Q92529 594 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 C10orf35Q96D05 121 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 C12orf42Q96LP6 360 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 FMO2Q99518 471 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 KCTD14Q9BQ13 255 aaPredicted RBP1.16□□□□□ -2.22
VPS50-216ENST00000484954 TMEM43Q9BTV4 400 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 TRIM62Q9BVG3 475 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 AZI2Q9H6S1 392 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 NIPAL2Q9H841 368 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 NMRAL1Q9HBL8 299 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 FAM49BQ9NUQ9 324 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 SNX6Q9UNH7 406 aa1.16□□□□□ -2.22
VPS50-216ENST00000484954 KIF16BQ96L93 1317 aa1.15□□□□□ -2.22
VPS50-216ENST00000484954 ZNF98A6NK75 572 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 SNTNA6NMZ2 147 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 MTX2O75431 263 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 CLDN9O95484 217 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 TSPAN12O95859 305 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 OR8U9P0C7N5 309 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 SSTR5P35346 364 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 HSD17B2P37059 387 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 MAGEA8P43361 318 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 SEC61GP60059 68 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 ACTR1AP61163 376 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 RPS11P62280 158 aaKnown RBP eCLIP1.15□□□□□ -2.23
VPS50-216ENST00000484954 ANKDD1AQ495B1 522 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 ANKRD22Q5VYY1 191 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 OR2A2Q6IF42 318 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 GUSBP11Q6P575 273 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 CDKL3Q8IVW4 592 aaPredicted RBP1.15□□□□□ -2.23
VPS50-216ENST00000484954 TBC1D21Q8IYX1 336 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 OR10J6PQ8NGY7 276 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 PIFOQ8TCI5 191 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 SCFD1Q8WVM8 642 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 COPS8Q99627 209 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 TBL1YQ9BQ87 522 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 LZTS2Q9BRK4 669 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 GON7Q9BXV9 100 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 MFFQ9GZY8 342 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 ENOPH1Q9UHY7 261 aa1.15□□□□□ -2.23
VPS50-216ENST00000484954 TRIP11Q15643 1979 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 ARPC4-TTLL3A0A0A6YYG9 625 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 IGHV1OR15-9A0A0B4J2B8 117 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 GPR89AB7ZAQ6 455 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 ZNF208O43345 1280 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 TIMM8AO60220 97 aaPredicted RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 SURF6O75683 361 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 IL1BP01584 269 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 PTMAP06454 111 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 GPR89BP0CG08 455 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 IL1RNP18510 177 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 CD1CP29017 333 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 VHLP40337 213 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 FBXW4P57775 412 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 FGL1Q08830 312 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 MRPL28Q13084 256 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 PPIL2Q13356 520 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 ZNF77Q15935 545 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 CENPPQ6IPU0 288 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 HCP5Q6MZN7 132 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 CASC1Q6TDU7 716 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 TMEM136Q6ZRR5 245 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 SLC25A48Q6ZT89 311 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 EFL1Q7Z2Z2 1120 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 TMEM135Q86UB9 458 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 ZCCHC7Q8N3Z6 543 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 ARL6IP6Q8N6S5 226 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 SPANXA2-OT1Q8N9U9 137 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 FAM83FQ8NEG4 500 aaPredicted RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 SDR9C7Q8NEX9 313 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 OR10R2Q8NGX6 335 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 NT5C3BQ969T7 300 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 PLEKHA8Q96JA3 519 aa1.14□□□□□ -2.23
VPS50-216ENST00000484954 CNN2Q99439 309 aaKnown RBP1.14□□□□□ -2.23
VPS50-216ENST00000484954 TIMM17AQ99595 171 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms