RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 RBP7Q96R05 134 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 BCL2L14Q9BZR8 327 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 EMC7Q9NPA0 242 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 SPAG4Q9NPE6 437 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 POLE4Q9NR33 117 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 CACNG2Q9Y698 323 aa12.02□□□□□ -0.48
UPF3A-204ENST00000475218 C5orf49A4QMS7 147 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 A6NIZ1 184 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 RNF212BA8MTL3 300 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 FAM157AC9JC47 383 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 H1F0P07305 194 aaKnown RBP12.02□□□□□ -0.49
UPF3A-204ENST00000475218 CTLA4P16410 223 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 CCNOP22674 350 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 MMP15P51511 669 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 RAP1BP61224 184 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 RAP1AP62834 184 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 CCL8P80075 99 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 DBPQ10586 325 aaPredicted RBP12.02□□□□□ -0.49
UPF3A-204ENST00000475218 ZNF774Q6NX45 483 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 ICA1LQ8NDH6 482 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 IPCEF1Q8WWN9 437 aaPredicted RBP12.02□□□□□ -0.49
UPF3A-204ENST00000475218 C11orf40Q8WZ69 217 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 RASD2Q96D21 266 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 NARFLQ9H6Q4 476 aa12.02□□□□□ -0.49
UPF3A-204ENST00000475218 A0A1W2PPL8 197 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 NR2C1P13056 603 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 SRD5A1P18405 259 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 MSX2P35548 267 aaPredicted RBP12.01□□□□□ -0.49
UPF3A-204ENST00000475218 LMO4P61968 165 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 KRTAP24-1Q3LI83 254 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 SPRNQ5BIV9 151 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 PTCHD4Q6ZW05 846 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 LINC01356Q8N9X3 169 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 SLC25A40Q8TBP6 338 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 FNDC8Q8TC99 324 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 GPX7Q96SL4 187 aaPredicted RBP12.01□□□□□ -0.49
UPF3A-204ENST00000475218 POFUT1Q9H488 388 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 NRIP3Q9NQ35 241 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 NKIRAS2Q9NYR9 191 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 CD300AQ9UGN4 299 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 IL20RAQ9UHF4 553 aa12.01□□□□□ -0.49
UPF3A-204ENST00000475218 TEX13CA0A0J9YWL9 993 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 PRSS37A4D1T9 235 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 GMNCA6NCL1 334 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 ZSCAN5BA6NJL1 495 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 NDUFAB1O14561 156 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 MPZL1O95297 269 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 RHCEP18577 417 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 MSR1P21757 451 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 THBS2P35442 1172 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 RPL4P36578 427 aaKnown RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 RBMXP38159 391 aaKnown RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 GPR6P46095 362 aaPredicted RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 MBNL2Q5VZF2 373 aaKnown RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 KLF14Q8TD94 323 aaPredicted RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 OR2J1Q9GZK6 312 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 LRMDAQ9H2I8 198 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 KCNN2Q9H2S1 579 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 GORASP2Q9H8Y8 452 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 ARL8BQ9NVJ2 186 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 SLCO1C1Q9NYB5 712 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 ADA2Q9NZK5 511 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 RPS6KA6Q9UK32 745 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 TMEM5Q9Y2B1 443 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 TIMM10BQ9Y5J6 103 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 V9GYQ6 96 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 TANC2Q9HCD6 1990 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 CDC14BO60729 498 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 IGHV1-46P01743 117 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 GDI2P50395 445 aaKnown RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 GTF2A1P52655 376 aaPredicted RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 TMEM33P57088 247 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 FGD3Q5JSP0 725 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 CYP4Z1Q86W10 505 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 RSRC1Q96IZ7 334 aaKnown RBP12□□□□□ -0.49
UPF3A-204ENST00000475218 ZNF570Q96NI8 536 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 TREM2Q9NZC2 230 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 GRHPRQ9UBQ7 328 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 KLHL21Q9UJP4 597 aa12□□□□□ -0.49
UPF3A-204ENST00000475218 ANK2Q01484 3957 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 DCTN6O00399 190 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 HSD17B1P14061 328 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 SDHAP31040 664 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 CDKN2AP42771 156 aaKnown RBP11.99□□□□□ -0.49
UPF3A-204ENST00000475218 CRYBB2P43320 205 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 DVL1P1P54792 670 aaPredicted RBP11.99□□□□□ -0.49
UPF3A-204ENST00000475218 KRR1Q13601 381 aaKnown RBP11.99□□□□□ -0.49
UPF3A-204ENST00000475218 ZER1Q7Z7L7 766 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 SYT9Q86SS6 491 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 OR52J3Q8NH60 311 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 ABHD4Q8TB40 342 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 SYT4Q9H2B2 425 aa11.99□□□□□ -0.49
UPF3A-204ENST00000475218 VSX1Q9NZR4 365 aaPredicted RBP11.99□□□□□ -0.49
UPF3A-204ENST00000475218 SAMD4AQ9UPU9 718 aaKnown RBP11.99□□□□□ -0.49
UPF3A-204ENST00000475218 C12orf71A8MTZ7 269 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 PPIHO43447 177 aaKnown RBP11.98□□□□□ -0.49
UPF3A-204ENST00000475218 AHCYL1O43865 530 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 NDUFB2O95178 105 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 GPANK1O95872 356 aa11.98□□□□□ -0.49
UPF3A-204ENST00000475218 TXNDC12O95881 172 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms