RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PRR31Q5SQ13 230 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 NANOGP8Q6NSW7 305 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 ALDH16A1Q8IZ83 802 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 SIGLECL1Q8N7X8 197 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 LRRC58Q96CX6 371 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 DIRC2Q96SL1 478 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 ALG12Q9BV10 488 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 POLR2J2Q9GZM3 115 aaKnown RBP19.1■□□□□ 0.65
USP4-208ENST00000464168 POLR2J3Q9H1A7 115 aaKnown RBP19.1■□□□□ 0.65
USP4-208ENST00000464168 PURGQ9UJV8 347 aaKnown RBP19.1■□□□□ 0.65
USP4-208ENST00000464168 BAG5Q9UL15 447 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 MED31Q9Y3C7 131 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 TGP01266 2768 aa19.1■□□□□ 0.65
USP4-208ENST00000464168 GMNCA6NCL1 334 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 SBK2P0C263 348 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 NR2C1P13056 603 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 FOXL1Q12952 345 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 PSG7Q13046 419 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 CDK5R2Q13319 367 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 TOP3AQ13472 1001 aaPredicted RBP19.09■□□□□ 0.65
USP4-208ENST00000464168 TAF11Q15544 211 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 ALG10Q5BKT4 473 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 RABL3Q5HYI8 236 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 ZNF774Q6NX45 483 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 FOXL2NBQ6ZUU3 175 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 CALHM3Q86XJ0 350 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 POP5Q969H6 163 aaKnown RBP19.09■□□□□ 0.65
USP4-208ENST00000464168 C4orf45Q96LM5 186 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 RBP7Q96R05 134 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 DCLRE1CQ96SD1 692 aaKnown RBP19.09■□□□□ 0.65
USP4-208ENST00000464168 EGFL7Q9UHF1 273 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 HIF3AQ9Y2N7 669 aa19.09■□□□□ 0.65
USP4-208ENST00000464168 POLR3KQ9Y2Y1 108 aaPredicted RBP19.09■□□□□ 0.65
USP4-208ENST00000464168 TRAPPC2LH3BP13 241 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 FBP2O00757 339 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 THRBP10828 461 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 OR1E2P47887 323 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 RPL27P61353 136 aaKnown RBP19.08■□□□□ 0.64
USP4-208ENST00000464168 PCBD1P61457 104 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 TNFAIP6P98066 277 aaPredicted RBP19.08■□□□□ 0.64
USP4-208ENST00000464168 ZMAT1Q5H9K5 638 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 MTX3Q5HYI7 312 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 RBMS3Q6XE24 437 aaKnown RBP19.08■□□□□ 0.64
USP4-208ENST00000464168 DOK3Q7L591 496 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 DYDC1Q8WWB3 177 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 C1QTNF5Q9BXJ0 243 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 ELOVL3Q9HB03 270 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 TMEM106BQ9NUM4 274 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 ZNF69Q9UC07 566 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 NUP50Q9UKX7 468 aa19.08■□□□□ 0.64
USP4-208ENST00000464168 TIMM8AO60220 97 aaPredicted RBP19.07■□□□□ 0.64
USP4-208ENST00000464168 PIP5K1CO60331 668 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 PRTN3P24158 256 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 ARHGDIAP52565 204 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 CYLC2Q14093 348 aaPredicted RBP19.07■□□□□ 0.64
USP4-208ENST00000464168 ENDOGQ14249 297 aaKnown RBP19.07■□□□□ 0.64
USP4-208ENST00000464168 KLF17Q5JT82 389 aaPredicted RBP19.07■□□□□ 0.64
USP4-208ENST00000464168 SHISA2Q6UWI4 295 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 ATP6V1G3Q96LB4 118 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 DUX5Q96PT3 197 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 ZNF696Q9H7X3 374 aa19.07■□□□□ 0.64
USP4-208ENST00000464168 IGHMP01871 453 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 SCG5P05408 212 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 GUCA1AP43080 201 aaPredicted RBP19.06■□□□□ 0.64
USP4-208ENST00000464168 SLC6A9P48067 706 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 ZNF154Q13106 437 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 TTMPQ5BVD1 217 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 ZER1Q7Z7L7 766 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 LRRC28Q86X40 367 aaPredicted RBP19.06■□□□□ 0.64
USP4-208ENST00000464168 BCL6BQ8N143 479 aaPredicted RBP19.06■□□□□ 0.64
USP4-208ENST00000464168 ZNF283Q8N7M2 679 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 LRRC75AQ8NAA5 344 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 FNDC8Q8TC99 324 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 BPIFA2Q96DR5 249 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 C1orf147Q96MC9 270 aaPredicted RBP19.06■□□□□ 0.64
USP4-208ENST00000464168 PATZ1Q9HBE1 687 aaKnown RBP19.06■□□□□ 0.64
USP4-208ENST00000464168 PLEK2Q9NYT0 353 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 AUP1Q9Y679 476 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 TANC2Q9HCD6 1990 aa19.06■□□□□ 0.64
USP4-208ENST00000464168 DNAJC9-AS1A6NH13 148 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 ZNF12P17014 697 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 CTXN1P60606 82 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 SEC61A1P61619 476 aaKnown RBP19.05■□□□□ 0.64
USP4-208ENST00000464168 FHL1Q13642 323 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 TMEM155Q4W5P6 130 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 ARMCX4Q5H9R4 360 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 ARL9Q6T311 187 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 Q6ZR03 302 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 SYT9Q86SS6 491 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 IGFN1Q86VF2 1251 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 KLHL36Q8N4N3 616 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 SPICQ8N5J4 248 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 SAMD8Q96LT4 415 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 GPA33Q99795 319 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 SH3GL1Q99961 368 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 ECSITQ9BQ95 431 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 POFUT1Q9H488 388 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 INSIG2Q9Y5U4 225 aa19.05■□□□□ 0.64
USP4-208ENST00000464168 A0A1W2PPL8 197 aa19.04■□□□□ 0.64
USP4-208ENST00000464168 C12orf71A8MTZ7 269 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms