RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ZNF154	Q13106	437 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	CDK5R2	Q13319	367 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	ENDOG	Q14249	297 aa	Known RBP	9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	FAM27B	Q5VT28	67 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	CPLX4	Q7Z7G2	160 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	PATL1	Q86TB9	770 aa	Known RBP	9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	ZNF283	Q8N7M2	679 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	CLDN22	Q8N7P3	220 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	LRRC75A	Q8NAA5	344 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	C10orf82	Q8WW14	230 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	STON2	Q8WXE9	905 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	TAF15	Q92804	592 aa	Known RBP eCLIP	9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	DUX5	Q96PT3	197 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	ELAC2	Q9BQ52	826 aa	Known RBP	9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	OR2H1	Q9GZK4	316 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	LRMDA	Q9H2I8	198 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	RABEP2	Q9H5N1	569 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	NANOG	Q9H9S0	305 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	MSL2	Q9HCI7	577 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	INIP	Q9NRY2	104 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	PLEK2	Q9NYT0	353 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	CGGBP1	Q9UFW8	167 aa	Predicted RBP	9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	NUP50	Q9UKX7	468 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815	INSIG2	Q9Y5U4	225 aa		9.4	□□□□□ -0.9
PTPN7-204	ENST00000462815		A0A1W2PRG6	482 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CLDN34	H7C241	214 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	TPD52L2	O43399	206 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	FOXH1	O75593	365 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	HIST1H2AB	P04908	130 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	RNASE1	P07998	156 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CST2	P09228	141 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	UMPS	P11172	480 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	TNFRSF1B	P20333	461 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CCNO	P22674	350 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	FPR2	P25090	351 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	DAP3	P51398	398 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	PPP1CB	P62140	327 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	DEFA6	Q01524	100 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	SF3A3	Q12874	501 aa	Known RBP eCLIP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	ZMYND11	Q15326	602 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CYP51A1	Q16850	503 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	TMEM155	Q4W5P6	130 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	PDLIM3	Q53GG5	364 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	C9orf139	Q6ZV77	190 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	HIST3H2A	Q7L7L0	130 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CALHM3	Q86XJ0	350 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	ABHD4	Q8TB40	342 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	HIST1H2AC	Q93077	130 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	SIKE1	Q9BRV8	207 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	FAM107B	Q9H098	131 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	TXNIP	Q9H3M7	391 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	UNKL	Q9H9P5	680 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	ZMAT3	Q9HA38	289 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	PATZ1	Q9HBE1	687 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	CYSLTR2	Q9NS75	346 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	DDX28	Q9NUL7	540 aa	Known RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	TMEM106B	Q9NUM4	274 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	UBAP1	Q9NZ09	502 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	ZDHHC8	Q9ULC8	765 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	HIF3A	Q9Y2N7	669 aa		9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	SOX21	Q9Y651	276 aa	Predicted RBP	9.39	□□□□□ -0.91
PTPN7-204	ENST00000462815	NOTCH1	P46531	2555 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	PLSCR5	A0PG75	271 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	ISPD	A4D126	451 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	MCIDAS	D6RGH6	385 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	FXYD1	O00168	92 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	FBP2	O00757	339 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	PIP5K1C	O60331	668 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	OR5F1	O95221	314 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	TROVE2	P10155	538 aa	Known RBP eCLIP	9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	LAP3	P28838	519 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	GCH1	P30793	250 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	LIPA	P38571	399 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	GDI2	P50395	445 aa	Known RBP	9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	ERF	P50548	548 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	PAX8	Q06710	450 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	SLC3A1	Q07837	685 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	LAPTM4A	Q15012	233 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	SLC9A3R2	Q15599	337 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	VMAC	Q2NL98	169 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	ZNF774	Q6NX45	483 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	HDDC2	Q7Z4H3	204 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	LRRC28	Q86X40	367 aa	Predicted RBP	9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	SLC30A8	Q8IWU4	369 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	C1orf174	Q8IYL3	243 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	OR10A6	Q8NH74	314 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	TMEM239	Q8WW34	195 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	NSMAF	Q92636	917 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	SGTB	Q96EQ0	304 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	DIRC2	Q96SL1	478 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	ALG12	Q9BV10	488 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	TMEM120A	Q9BXJ8	343 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	EGLN1	Q9GZT9	426 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	NSRP1	Q9H0G5	558 aa	Known RBP	9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	CCNB1IP1	Q9NPC3	277 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815	EGFL7	Q9UHF1	273 aa		9.38	□□□□□ -0.91
PTPN7-204	ENST00000462815		A0A0G2JND7	137 aa		9.37	□□□□□ -0.91
PTPN7-204	ENST00000462815	PLAT	P00750	562 aa		9.37	□□□□□ -0.91
PTPN7-204	ENST00000462815	IGHV4-38-2	P0DP08	117 aa		9.37	□□□□□ -0.91
PTPN7-204	ENST00000462815	KITLG	P21583	273 aa		9.37	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms