RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TRBC1P01850 177 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 OPN1LWP04000 364 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 IGF1P05019 195 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 FCGR3AP08637 254 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 ANXA5P08758 320 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CCDC159P0C7I6 412 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 UMPSP11172 480 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 DBTP11182 482 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 SFTPCP11686 197 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 HTR1EP28566 365 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CD70P32970 193 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CSNK1DP48730 415 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 PRMT2P55345 433 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 SH3BGRP55822 239 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 OR4D2P58180 307 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MTPNP58546 118 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 RPL38P63173 70 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 DEFB103AP81534 67 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 HMGCS1Q01581 520 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MERTKQ12866 999 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 DYNC1I2Q13409 638 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 ATXN7L3Q14CW9 347 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 ABRAXAS2Q15018 415 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 TTLL9Q3SXZ7 439 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 PHYHD1Q5SRE7 291 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MUC21Q5SSG8 566 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 GPRC6AQ5T6X5 926 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 LRRC66Q68CR7 880 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 GLYATQ6IB77 296 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 NANOGP8Q6NSW7 305 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 DOK6Q6PKX4 331 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 SBSNQ6UWP8 590 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MBOAT1Q6ZNC8 495 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 RFLNAQ6ZTI6 216 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 NUFIP2Q7Z417 695 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 ZNF786Q8N393 782 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 LIX1Q8N485 282 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CLDN19Q8N6F1 224 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 PACRGLQ8N7B6 248 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MAPK1IP1LQ8NDC0 245 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 GPR26Q8NDV2 337 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 STXBP6Q8NFX7 210 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 OR2AP1Q8NGE2 309 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 ITFG1Q8TB96 612 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CNIH3Q8TBE1 160 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MAGEE2Q8TD90 523 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 SKA2Q8WVK7 121 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 CYGBQ8WWM9 190 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 PIGCQ92535 297 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 C11orf52Q96A22 123 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 NABP1Q96AH0 204 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 RAB3CQ96E17 227 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 RMND5BQ96G75 393 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 CENPNQ96H22 339 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 C7orf34Q96L11 122 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 AMDHD1Q96NU7 426 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 TGM7Q96PF1 710 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CCNL2Q96S94 520 aaPredicted RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 SH3GL3Q99963 347 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 SLC30A2Q9BRI3 323 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 CHID1Q9BWS9 393 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 ANKRD60Q9BZ19 345 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 DPY30Q9C005 99 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 LIME1Q9H400 295 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 NANOGQ9H9S0 305 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 LRTM1Q9HBL6 345 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 ZFP14Q9HCL3 533 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 IL26Q9NPH9 171 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 C8orf4Q9NR00 106 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 HEBP1Q9NRV9 189 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 AGPAT4Q9NRZ5 378 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MRPL39Q9NYK5 338 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 PIPOXQ9P0Z9 390 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 THEGQ9P2T0 379 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 OPTCQ9UBM4 332 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 TDRD15B5MCY1 1934 aaKnown RBP3.38□□□□□ -1.87
VPS29-202ENST00000447578 PTPRDP23468 1912 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MYLKQ15746 1914 aa3.38□□□□□ -1.87
VPS29-202ENST00000447578 MPTX1A8MV57 137 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ARHGEF33A8MVX0 844 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 H3BSA7 217 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 MANBAO00462 879 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 BTN3A3O00478 584 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 ACOX3O15254 700 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CCL16O15467 120 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CLOCKO15516 846 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 FCMRO60667 390 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 KRTAP5-8O75690 187 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 STK16O75716 305 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CLDN9O95484 217 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CLIC3O95833 236 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 NPPAP01160 153 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 KRT6AP02538 564 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 IGFBP1P08833 259 aaPredicted RBP3.37□□□□□ -1.87
VPS29-202ENST00000447578 OR56A5P0C7T3 313 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CCL5P13501 91 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 GGT1P19440 569 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 PCMT1P22061 227 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CCR7P32248 378 aa3.37□□□□□ -1.87
VPS29-202ENST00000447578 CAPGP40121 348 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms