RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GLRX2Q9NS18 164 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 KLHL28Q9NXS3 571 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CLCF1Q9UBD9 225 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ANGPT4Q9Y264 503 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF443Q9Y2A4 671 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 CMAHPQ9Y471 501 aa2.19□□□□□ -2.06
VPS13A-208ENST00000423463 SPIN1Q9Y657 262 aaPredicted RBP2.19□□□□□ -2.06
VPS13A-208ENST00000423463 NUP214P35658 2090 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SVILO95425 2214 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 GTF3C1Q12789 2109 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TMED7-TICAM2A0A0A6YYA0 188 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SLC22A20A6NK97 555 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CLDN24A6NM45 220 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PRR23D1E9PI22 279 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FXYD1O00168 92 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 AIM2O14862 343 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF208O43345 1280 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CXCL13O43927 109 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 GMFGO60234 142 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MITFO75030 526 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 DCTN3O75935 186 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TPPPO94811 219 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MFN2O95140 757 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PMS2P2O95744 297 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CLDN1O95832 211 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HIST1H2ABP04908 130 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 RNF224P0DH78 156 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PRR23D2P0DMB1 279 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SELLP14151 372 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TCEA1P23193 301 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HTR1EP28566 365 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PCGF2P35227 344 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PEX19P40855 299 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 ACAA2P42765 397 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SLC1A3P43003 542 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 IDH2P48735 452 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MFAP4P55083 255 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CLDN20P56880 219 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MTPNP58546 118 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 COPZ1P61923 177 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 RPL36AP83881 106 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MERTKQ12866 999 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FOXF1Q12946 379 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SELENBP1Q13228 472 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CAPRIN1Q14444 709 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CTF1Q16619 201 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CYP51A1Q16850 503 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CTU2Q2VPK5 515 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FBXL19-AS1Q494R0 122 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HBMQ6B0K9 141 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SIGIRRQ6IA17 410 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 WBP2NLQ6ICG8 309 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF836Q6ZNA1 936 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TMPPEQ6ZT21 453 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 NCCRP1Q6ZVX7 275 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PLEKHM3Q6ZWE6 761 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CCDC80Q76M96 950 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HIST3H2AQ7L7L0 130 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 P4HA3Q7Z4N8 544 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HMGN2P46Q86SG4 172 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SATL1Q86VE3 508 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PTOV1Q86YD1 416 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MCEMP1Q8IX19 187 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 UBQLNLQ8IYU4 475 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SLC43A2Q8N370 569 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 OR10A6Q8NH74 314 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 OR10D3Q8NH80 312 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 RASSF5Q8WWW0 418 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SMPDL3BQ92485 455 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FIG4Q92562 907 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MAL2Q969L2 176 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CPNE4Q96A23 557 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 RCN3Q96D15 328 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SAT2Q96F10 170 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 ZNF583Q96ND8 569 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CCT8L2Q96SF2 557 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 KLHDC3Q9BQ90 382 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 GPATCH1Q9BRR8 931 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PCGF1Q9BSM1 259 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 SFXN3Q9BWM7 321 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PINK1Q9BXM7 581 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 KRTAP2-2Q9BYT5 123 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 POTEKPQ9BYX7 375 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PRRG4Q9BZD6 226 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FAM107BQ9H098 131 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 PIGMQ9H3S5 423 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MAGIXQ9H6Y5 334 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 ARMCX1Q9P291 453 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 OSGIN1Q9UJX0 560 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MCTS1Q9ULC4 181 aaKnown RBP2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TRAPPC4Q9Y296 219 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TMED7Q9Y3B3 224 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 HDGFL3Q9Y3E1 203 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 MYO7BQ6PIF6 2116 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CFAP46Q8IYW2 2715 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 A0A087WYN8 130 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 FAM220BPB1ANY3 271 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 CTDSP2O14595 271 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 BUB3O43684 328 aa2.18□□□□□ -2.06
VPS13A-208ENST00000423463 TPST1O60507 370 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms