RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 POM121L2Q96KW2 1035 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 HS3ST2Q9Y278 367 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 KIF13BQ9NQT8 1826 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SPTBP11277 2137 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 RFXAPO00287 272 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 FRS3O43559 492 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 COX7A2P2O60397 106 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CHRM2P08172 466 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 RPS17P08708 135 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PCMT1P22061 227 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TAGLN2P37802 199 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SMAD2Q15796 467 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 HFEQ30201 348 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ADPRMQ3LIE5 342 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ADAM5Q6NVV9 412 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TTC9BQ8N6N2 239 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MORN4Q8NDC4 146 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ADIPOR1Q96A54 375 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MFRPQ9BY79 579 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MYOZ1Q9NP98 299 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CKAP5Q14008 2032 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TAF1P21675 1872 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SLC22A20A6NK97 555 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ZFP92A6NM28 416 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 MEOX1P50221 254 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 HSF1Q00613 529 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ZNF691Q5VV52 312 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 C1orf140Q5VVS0 124 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 STEAP1BQ6NZ63 245 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SLC35D2Q76EJ3 337 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 FYTTD1Q96QD9 318 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 THYN1Q9P016 225 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 USP54Q70EL1 1684 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CD14P08571 375 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 LIPCP11150 499 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 GPR3P46089 330 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PTTG1IPP53801 180 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 HBA1P69905 142 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 Q499Y3 187 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 LDLRAD1Q5T700 205 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 GALMQ96C23 342 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PDLIM5Q96HC4 596 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SORBS1Q9BX66 1292 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ACTR3CQ9C0K3 210 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TMEM231Q9H6L2 316 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PPP1R3CQ9UQK1 317 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 DBX1A6NMT0 343 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 G3V3Y1 287 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SLCO2B1O94956 709 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 RPL35P42766 123 aaKnown RBP6.3□□□□□ -1.4
SCN1A-204ENST00000423058 SELENBP1Q13228 472 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 ADIRFQ15847 76 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 RAB6CQ53S08 254 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 FAM26DQ5JW98 314 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 TRNP1Q6NT89 227 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 BHLHE23Q8NDY6 225 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 CCDC74BQ96LY2 380 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 POFUT1Q9H488 388 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 PRSS16Q9NQE7 514 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 C5P01031 1676 aa6.3□□□□□ -1.4
SCN1A-204ENST00000423058 H0YIV9 168 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 BMP1P13497 986 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ADRA2CP18825 462 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 TPMTP51580 245 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PGGT1BP53609 377 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SNRPGP62308 76 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CDK5Q00535 292 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 REEP5Q00765 189 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PHLDA2Q53GA4 152 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR10K2Q6IF99 312 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 DCXRQ7Z4W1 244 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 VASH2Q86V25 355 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 TUSC5Q8IXB3 177 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 TRMT61AQ96FX7 289 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 A4GALTQ9NPC4 353 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RYDENQ9NUL5 291 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 LOXL2Q9Y4K0 774 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PTGESO14684 152 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 NDUFB3O43676 98 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR2J3O76001 311 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PRRX1P54821 245 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ADPRHP54922 357 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 MOB3BQ86TA1 216 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PLPP6Q8IY26 295 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 OR4F15Q8NGB8 312 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ARRDC1-AS1Q9H2J1 176 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 EMC7Q9NPA0 242 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 MAGEB4O15481 346 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SCGB1C2P0DMR2 95 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SRMP19623 302 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 HTR1FP30939 366 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 NPY4RP50391 375 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CLINT1Q14677 625 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 PLA1AQ53H76 456 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 CPEB2Q7Z5Q1 589 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 ZDHHC23Q8IYP9 409 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 KCNRGQ8N5I3 272 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 RPL3LQ92901 407 aaKnown RBP6.29□□□□□ -1.4
SCN1A-204ENST00000423058 SEH1LQ96EE3 360 aa6.29□□□□□ -1.4
SCN1A-204ENST00000423058 INSM2Q96T92 566 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms