RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PIGFQ07326 219 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 TBRG1Q3YBR2 411 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 NRN1LQ496H8 165 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 KCTD21Q4G0X4 260 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 TEX30Q5JUR7 227 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 SFRP5Q5T4F7 317 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 OR7E24Q6IFN5 339 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ZNF627Q7L945 461 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 BHLHA15Q7RTS1 189 aaPredicted RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 SKA3Q8IX90 412 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 SGCDQ92629 289 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 BCL2L2Q92843 193 aaPredicted RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 RNF121Q9H920 327 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 FKBP14Q9NWM8 211 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ELOVL5Q9NYP7 299 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 JKAMPQ9P055 326 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ASH2LQ9UBL3 628 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 TMEM14AQ9Y6G1 99 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ZNF670-ZNF695F2Z2N8 137 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 CDK1P06493 297 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 RPSAP08865 295 aaKnown RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 OR2T7P0C7T2 308 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 MYL12AP19105 171 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 CD79BP40259 229 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ASCL1P50553 236 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 UBE2NP61088 152 aaKnown RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 EIF2B1Q14232 305 aaKnown RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 ENDOGQ14249 297 aaKnown RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 GABRA6Q16445 453 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 HIKESHIQ53FT3 197 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 TMEM154Q6P9G4 183 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 CORO6Q6QEF8 472 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 CDC20BQ86Y33 519 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ACBD7Q8N6N7 88 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 ZNF454Q8N9F8 522 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 OR2T27Q8NH04 317 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 LILRB4Q8NHJ6 448 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 OTOSQ8NHW6 89 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 MNTQ99583 582 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 HDHD5Q9BXW7 423 aa15.84■□□□□ 0.13
SDC1-203ENST00000403076 PAK1IP1Q9NWT1 392 aaPredicted RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 DIMT1Q9UNQ2 313 aaKnown RBP15.84■□□□□ 0.13
SDC1-203ENST00000403076 DIDO1Q9BTC0 2240 aaKnown RBP15.83■□□□□ 0.13
SDC1-203ENST00000403076 PYCARD-AS1I3L0S3 204 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 ZG16O60844 167 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 C21orf33P30042 268 aaPredicted RBP15.83■□□□□ 0.12
SDC1-203ENST00000403076 CDH15P55291 814 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 PCBD1P61457 104 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 FAM27E3Q08E93 113 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 AQP6Q13520 282 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 SLC36A2Q495M3 483 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 SLC18B1Q6NT16 456 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 STAC2Q6ZMT1 411 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 DCXRQ7Z4W1 244 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 LHFPL3Q86UP9 236 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 C1orf162Q8NEQ5 155 aaPredicted RBP15.83■□□□□ 0.12
SDC1-203ENST00000403076 NANOS1Q8WY41 292 aaKnown RBP15.83■□□□□ 0.12
SDC1-203ENST00000403076 FBXO17Q96EF6 278 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 LRRC46Q96FV0 321 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 KCNJ16Q9NPI9 418 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 CYB5R1Q9UHQ9 305 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 EXOSC1Q9Y3B2 195 aaKnown RBP15.83■□□□□ 0.12
SDC1-203ENST00000403076 SNX5Q9Y5X3 404 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 LHFPL6Q9Y693 200 aa15.83■□□□□ 0.12
SDC1-203ENST00000403076 ZNF462Q96JM2 2506 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 A0A1W2PQL4 384 aaPredicted RBP15.82■□□□□ 0.12
SDC1-203ENST00000403076 MT-ND2P03891 347 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 LYNP07948 512 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 PATE4P0C8F1 98 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 CD79AP11912 226 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 PSMB1P20618 241 aaKnown RBP15.82■□□□□ 0.12
SDC1-203ENST00000403076 MVKQ03426 396 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 CCDC36Q8IYA8 594 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 GJC3Q8NFK1 279 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 TTTY10Q9BZA0 68 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 GDF2Q9UK05 429 aaPredicted RBP15.82■□□□□ 0.12
SDC1-203ENST00000403076 COPS3Q9UNS2 423 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 TIMM10BQ9Y5J6 103 aa15.82■□□□□ 0.12
SDC1-203ENST00000403076 HIVEP3Q5T1R4 2406 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 NKX2-6A6NCS4 301 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TRIM64A6NGJ6 449 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 J3QRE1 110 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 PHYHO14832 338 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 IGHA1P01876 353 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 HLA-HP01893 362 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 PSKH1P11801 424 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 ZNF32P17041 273 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 ALOX5APP20292 161 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TUBA1BP68363 451 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TUBA4AP68366 448 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 SCRN3Q0VDG4 424 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 PCK2Q16822 640 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TMEM53Q6P2H8 277 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 XKRXQ6PP77 449 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TUBA1AQ71U36 451 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 PRSS48Q7RTY5 328 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 DPPA2Q7Z7J5 298 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 STEAP2Q8NFT2 490 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 TSPAN14Q8NG11 270 aa15.81■□□□□ 0.12
SDC1-203ENST00000403076 ASB17Q8WXJ9 295 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms