RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TCEANCQ8N8B7 351 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 LRRC75AQ8NAA5 344 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 OR4Q3Q8NH05 313 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 FAM168AQ92567 244 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 OXGR1Q96P68 337 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 SORCS2Q96PQ0 1159 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 NR1H4Q96RI1 486 aaPredicted RBP8.98□□□□□ -0.97
NEDD8-202ENST00000396828 IL4I1Q96RQ9 567 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 KCNK17Q96T54 332 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 KATNB1Q9BVA0 655 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 CLN6Q9NWW5 311 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 H2AFY2Q9P0M6 372 aaPredicted RBP8.98□□□□□ -0.97
NEDD8-202ENST00000396828 UPB1Q9UBR1 384 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 SEC14L4Q9UDX3 406 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 MOKQ9UQ07 419 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 RASD1Q9Y272 281 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 NOX1Q9Y5S8 564 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 IER3IP1Q9Y5U9 82 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 TENM1Q9UKZ4 2725 aa8.98□□□□□ -0.97
NEDD8-202ENST00000396828 IGHV1-18A0A0C4DH31 117 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 LOC102725191A0A1B0GVB3 256 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 VWC2LB2RUY7 222 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 MS4A18H0YCH9 400 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 XKRYO14609 159 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SERPINI2O75830 405 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 F12P00748 615 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 IGHMP01871 453 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 FAM157CP0CG43 387 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SLC25A16P16260 332 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 MPGP29372 298 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SDHAP31040 664 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 APOBEC3AP31941 199 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SELENOPP49908 381 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 CHN2P52757 468 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 DSCR9P59020 149 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 RPL27P61353 136 aaKnown RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 CSNK2BP67870 215 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TUBA1BP68363 451 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TUBA4AP68366 448 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TEKQ02763 1124 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 CD47Q08722 323 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 CDK5R2Q13319 367 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TOP3AQ13472 1001 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 MS4A18Q3C1V0 323 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 KRTAP24-1Q3LI83 254 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SLC35F1Q5T1Q4 408 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 FAM205BPQ63HN1 556 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 ZNF544Q6NX49 715 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TUBA1AQ71U36 451 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SSX8Q7RTT4 187 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 HDDC2Q7Z4H3 204 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 UEVLDQ8IX04 471 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 OR9K2Q8NGE7 335 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 OR52E2Q8NGJ4 325 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 RHOXF1Q8NHV9 184 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TMEM163Q8TC26 289 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 HDAC2Q92769 488 aaKnown RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 FBXO17Q96EF6 278 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SOX7Q9BT81 388 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 YTHDF1Q9BYJ9 559 aaKnown RBP8.97□□□□□ -0.97
NEDD8-202ENST00000396828 TXNIPQ9H3M7 391 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 FN3KQ9H479 309 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SEC61A2Q9H9S3 476 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 CMC2Q9NRP2 79 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 SCN3BQ9NY72 215 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 UBAP1Q9NZ09 502 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 BLOC1S6Q9UL45 172 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 ADAM18Q9Y3Q7 739 aa8.97□□□□□ -0.97
NEDD8-202ENST00000396828 A6NIZ1 184 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 NPIPB13A6NJU9 1138 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 NPIPB4C9JG80 1138 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 PRR23D1E9PI22 279 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 PRKYO43930 277 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 TNFAIP8O95379 198 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 TXNDC12O95881 172 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 BCL10O95999 233 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 IFNA2P01563 188 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 PRR23D2P0DMB1 279 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 ZNF43P17038 809 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 EFNA4P52798 201 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 CXCR4P61073 352 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 RAP1BP61224 184 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 RAP1AP62834 184 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 POU3F1Q03052 451 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 KRR1Q13601 381 aaKnown RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 OCLNQ16625 522 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 RBM48Q5RL73 367 aaKnown RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 SLC25A30Q5SVS4 291 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 C6orf141Q5SZD1 244 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 CYB5R2Q6BCY4 276 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 UGT2A3Q6UWM9 527 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 SLC35D2Q76EJ3 337 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 AAED1Q7RTV5 226 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 MYPOPQ86VE0 399 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 KDM8Q8N371 416 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 C1orf162Q8NEQ5 155 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-202ENST00000396828 OR4K13Q8NH42 304 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 CNIH3Q8TBE1 160 aa8.96□□□□□ -0.98
NEDD8-202ENST00000396828 FBLIM1Q8WUP2 373 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms