RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ADAM29Q9UKF5 820 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 SDCBPO00560 298 aaPredicted RBP10.88□□□□□ -0.67
SYNPO-202ENST00000394243 PMCHP20382 165 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 RGRP47804 291 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 CLDN17P56750 224 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 DLK2Q6UY11 383 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 TMEFF1Q8IYR6 380 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 FAM24BQ8N5W8 94 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 LYRM2Q9NU23 88 aaPredicted RBP10.88□□□□□ -0.67
SYNPO-202ENST00000394243 TAPBPO15533 448 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 PRKRAO75569 313 aaKnown RBP10.88□□□□□ -0.67
SYNPO-202ENST00000394243 SOD1P00441 154 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 CST2P09228 141 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 MMP7P09237 267 aaPredicted RBP10.88□□□□□ -0.67
SYNPO-202ENST00000394243 CEBPEQ15744 281 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 DCXRQ7Z4W1 244 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 LKAAEAR1Q8TD35 194 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 GINS3Q9BRX5 216 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 RHNO1Q9BSD3 238 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 ACTR3CQ9C0K3 210 aaPredicted RBP10.88□□□□□ -0.67
SYNPO-202ENST00000394243 PLEKHA2Q9HB19 425 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 PISDQ9UG56 409 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 MMP24Q9Y5R2 645 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 CNTRLQ7Z7A1 2325 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 ZAR1LA6NP61 321 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 PTGESO14684 152 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 IQCF3P0C7M6 154 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 SOX18P35713 384 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF85Q03923 595 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 SLC16A12Q6ZSM3 486 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 GALNT16Q8N428 558 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 C11orf42Q8N5U0 333 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 STRADBQ9C0K7 418 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 GABRQQ9UN88 632 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 TRAPPC1Q9Y5R8 145 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 DRGXA6NNA5 263 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 LRP3O75074 770 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 TTRP02766 147 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF92Q03936 586 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 C9orf152Q5JTZ5 239 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF429Q86V71 674 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 SLC35G3Q8N808 338 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 OR6S1Q8NH40 331 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 MMP26Q9NRE1 261 aa10.88□□□□□ -0.67
SYNPO-202ENST00000394243 A0A1W2PNV4 684 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 PLSCR5A0PG75 271 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 ADAMTS4O75173 837 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 NAT2P11245 290 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 PRLHRP49683 370 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 MAP2K6P52564 334 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 RTP2Q5QGT7 225 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 LIPNQ5VXI9 398 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM179BQ7Z7N9 219 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TCTN2Q96GX1 697 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 SERINC4A6NH21 518 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 SNAI1O95863 264 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 CD14P08571 375 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 BAMBIQ13145 260 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 LYG2Q86SG7 212 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 CCDC190Q86UF4 302 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 OR2L13Q8N349 312 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TRAF4Q9BUZ4 470 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 YTHDF2Q9Y5A9 579 aaKnown RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TCRBV5S2A0A599 114 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 K7EQM0 130 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 PVRP15151 417 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 S100A7P31151 101 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 PMS2P11Q13670 270 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TAZQ16635 292 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 NKAIN4Q8IVV8 208 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 OR5M1Q8NGP8 315 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 C2orf50Q96LR7 162 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 GPR173Q9NS66 373 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 PIGLQ9Y2B2 252 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 ENTPD2Q9Y5L3 495 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 CTNSO60931 367 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TNFSF4P23510 183 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 HRH1P35367 487 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 GSK3AP49840 483 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TMEM183BQ1AE95 376 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 H2BFWTQ7Z2G1 175 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TM4SF18Q96CE8 201 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 DTD2Q96FN9 168 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 Q96M85 177 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 LRIT1Q9P2V4 623 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 KLK11Q9UBX7 282 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 GUK1Q16774 197 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TRNP1Q6NT89 227 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 MARCH1Q8TCQ1 289 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 USB1Q9BQ65 265 aaKnown RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 XKRY2A2RUG3 117 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 ZNF891A8MT65 544 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 HEPACAM2A8MVW5 462 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 M0R143 59 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 OLFM2O95897 454 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 POU3F2P20265 443 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 TOMM34Q15785 309 aaPredicted RBP10.87□□□□□ -0.67
SYNPO-202ENST00000394243 CDONQ4KMG0 1287 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 MIDNQ504T8 468 aa10.87□□□□□ -0.67
SYNPO-202ENST00000394243 FAM162BQ5T6X4 162 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms