RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 SYNPRQ8TBG9 265 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TSEN15Q8WW01 171 aaKnown RBP8.71□□□□□ -1.02
COL6A3-204ENST00000392003 NUDT22Q9BRQ3 303 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TAS2R10Q9NYW0 307 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 TMED7Q9Y3B3 224 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 U3KQ87 197 aa8.71□□□□□ -1.02
COL6A3-204ENST00000392003 MPDZO75970 2070 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 HSPB2A8KAH6 182 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SSNA1O43805 119 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SUSD5O60279 629 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 BGLAPP02818 100 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ACSM4P0C7M7 580 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ANXA3P12429 323 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 MAGEB1P43366 347 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 P2RX1P51575 399 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 CLDN12P56749 244 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 TNK1Q13470 666 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 HSPB2Q16082 182 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OR2B11Q5JQS5 317 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF684Q5T5D7 378 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 STAC2Q6ZMT1 411 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ZNF227Q86WZ6 799 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 KMT5CQ86Y97 462 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 C9orf40Q8IXQ3 194 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 EXD3Q8N9H8 876 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 TMEM234Q8WY98 164 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 PISDQ9UG56 409 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 KLHDC2Q9Y2U9 406 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 NCOR1O75376 2440 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 C7orf66A4D0T2 115 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 NAP1L6A6NFF2 107 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 A8MVM7 634 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 GABARAPH6UMI1 98 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 DCTN6O00399 190 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 TSPAN2O60636 221 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 PLGP00747 810 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 RAF1P04049 648 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 MST1P26927 711 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 CCR6P51684 374 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 BAMBIQ13145 260 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 TOMM34Q15785 309 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SGCBQ16585 318 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 PHF19Q5T6S3 580 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 CD276Q5ZPR3 534 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 HDDC2Q7Z4H3 204 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SERPINA12Q8IW75 414 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 EID2Q8N6I1 236 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OR2G2Q8NGZ5 317 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OR56B4Q8NH76 319 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 HSD17B8Q92506 261 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 NEU1Q99519 415 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 DUSP23Q9BVJ7 150 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 VN1R1Q9GZP7 353 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OPN3Q9H1Y3 402 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 EMC7Q9NPA0 242 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ETV7Q9Y603 341 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 MEX3AA1L020 520 aaKnown RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OR2T1O43869 369 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 UPK3AO75631 287 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 AKR7A3O95154 331 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 MBP02144 154 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 RLN2P04090 185 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ALOX5APP20292 161 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ABCD3P28288 659 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 RAG2P55895 527 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 RPL27P61353 136 aaKnown RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ODF4Q2M2E3 257 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 CCDC157Q569K6 752 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SLC18B1Q6NT16 456 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 KCTD18Q6PI47 426 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 RPS4Y2Q8TD47 263 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SFT2D1Q8WV19 159 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ASB17Q8WXJ9 295 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 EDAQ92838 391 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SCMH1Q96GD3 660 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 OR51M1Q9H341 326 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 AUNIPQ9H7T9 357 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 FSCN3Q9NQT6 498 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 VSX1Q9NZR4 365 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 FRRS1LQ9P0K9 344 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 ELF5Q9UKW6 265 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-204ENST00000392003 SRPK3Q9UPE1 567 aa8.7□□□□□ -1.02
COL6A3-204ENST00000392003 PQLC2LA1A4F0 135 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 K7ESF4 209 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SLC31A2O15432 143 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 MAS1P04201 325 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 SPARCP09486 303 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 RRASP10301 218 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 BTCP35070 178 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 CCR9P51686 369 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 NR0B2Q15466 257 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 C1orf140Q5VVS0 124 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 GRINAQ7Z429 371 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 DUSP19Q8WTR2 217 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 RGP1Q92546 391 aaPredicted RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 DCBLD2Q96PD2 775 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 PTDSS2Q9BVG9 487 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 ELOVL3Q9HB03 270 aa8.69□□□□□ -1.02
COL6A3-204ENST00000392003 MRPL15Q9P015 296 aaKnown RBP8.69□□□□□ -1.02
COL6A3-204ENST00000392003 RCE1Q9Y256 329 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms