RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TNFSF11O14788 317 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 ELK1P19419 428 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 VEGFCP49767 419 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 CLDN15P56746 228 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 LYPD4Q6UWN0 246 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 SLC22A24Q8N4F4 322 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 OR5L1Q8NGL2 311 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 DHRS1Q96LJ7 313 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 DCLRE1CQ96SD1 692 aaKnown RBP13.1□□□□□ -0.31
TCOF1-202ENST00000377797 TMEM59Q9BXS4 323 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 C11orf54Q9H0W9 315 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-202ENST00000377797 RANBP3Q9H6Z4 567 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-202ENST00000377797 STEAP1Q9UHE8 339 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 IGKV1D-16P01601 117 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 ACHEP22303 614 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 TRIP6Q15654 476 aaKnown RBP13.1□□□□□ -0.31
TCOF1-202ENST00000377797 SSX1Q16384 188 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 HES3Q5TGS1 186 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 Q6ZNX1 250 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 SLC16A12Q6ZSM3 486 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 CD163Q86VB7 1156 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 OIT3Q8WWZ8 545 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 ZMAT3Q9HA38 289 aaKnown RBP13.1□□□□□ -0.31
TCOF1-202ENST00000377797 PILRBQ9UKJ0 227 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 PTPRDP23468 1912 aa13.1□□□□□ -0.31
TCOF1-202ENST00000377797 SFTPBP07988 381 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SSPNQ14714 243 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 WIPI1Q5MNZ9 446 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 METTL11BQ5VVY1 283 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 CCDC54Q8NEL0 328 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SAP25Q8TEE9 199 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 NINJ1Q92982 152 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 OR51J1Q9H342 316 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 GLS2Q9UI32 602 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 FBXO4Q9UKT5 387 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 MRPS28Q9Y2Q9 187 aaKnown RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 DIRAS3O95661 229 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 PPIAP62937 165 aaKnown RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ATG4DQ86TL0 474 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 PLA2G3Q9NZ20 509 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 TTC28Q96AY4 2481 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 H3BUI4 141 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 IL32P24001 234 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 GCH1P30793 250 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 CX3CR1P49238 355 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SLC25A1P53007 311 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 CLPPQ16740 277 aaPredicted RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 TMEM81Q6P7N7 255 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 DND1Q8IYX4 353 aaKnown RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ZADH2Q8N4Q0 377 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SELENOIQ9C0D9 397 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SLIRPQ9GZT3 109 aaKnown RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ERP29P30040 261 aaKnown RBP13.09□□□□□ -0.31
TCOF1-202ENST00000377797 PTGS2P35354 604 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 VAMP2P63027 116 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 NAXDQ8IW45 347 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 MKXQ8IYA7 352 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF611Q8N823 705 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 OR51E1Q8TCB6 317 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 KCNE4Q8WWG9 221 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 TOMM40LQ969M1 308 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ITPKCQ96DU7 683 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 PELI1Q96FA3 418 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 SLC5A7Q9GZV3 580 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 ETV7Q9Y603 341 aa13.09□□□□□ -0.31
TCOF1-202ENST00000377797 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 TBX6O95947 436 aaPredicted RBP13.08□□□□□ -0.31
TCOF1-202ENST00000377797 ITGB2P05107 769 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 PRSS45Q7RTY3 260 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 ZNF721Q8TF20 911 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 ROBO4Q8WZ75 1007 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 C12orf10Q9HB07 376 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 NOX3Q9HBY0 568 aa13.08□□□□□ -0.31
TCOF1-202ENST00000377797 ARID1AO14497 2285 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 NLRC5Q86WI3 1866 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 TPOP07202 933 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 ACAA2P42765 397 aaKnown RBP13.08□□□□□ -0.32
TCOF1-202ENST00000377797 NR4A2P43354 598 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 ARHGDIBP52566 201 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 TAS2R19P59542 299 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 FMODQ06828 376 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 SKP2Q13309 424 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 TIGD3Q6B0B8 471 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 PXKQ7Z7A4 578 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 BEST3Q8N1M1 668 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 NKAIN3Q8N8D7 197 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 TAS2R4Q9NYW5 299 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 TCFL5Q9UL49 500 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 A0A1W2PQD3 144 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 M0R233 179 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 DHHO43323 396 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 SERPINA7P05543 415 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 CELF2-AS1Q8N7Q2 184 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 ZNF615Q8N8J6 731 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 STEAP2Q8NFT2 490 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 KCNG3Q8TAE7 436 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 ARL5BQ96KC2 179 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 BHLHE40O14503 412 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 KNG1P01042 644 aa13.08□□□□□ -0.32
TCOF1-202ENST00000377797 EIF5AP63241 154 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms