RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 PELI1Q96FA3 418 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ITCHQ96J02 903 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 DDOQ99489 341 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SDHCQ99643 169 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 CMKLR1Q99788 373 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 NEURL2Q9BR09 285 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 NDEL1Q9GZM8 345 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ROGDIQ9GZN7 287 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ESRP2Q9H6T0 727 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 PHPT1Q9NRX4 125 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 ZNF282Q9UDV7 671 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 PRUNE2Q8WUY3 3088 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 KIAA0100Q14667 2235 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 RFXAPO00287 272 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 NARSO43776 548 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 RAMP3O60896 148 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 GMNNO75496 209 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 PRKRAO75569 313 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 KLF8O95600 359 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 NTN1O95631 604 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 PIPP12273 146 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 UQCRBP14927 111 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 BMP7P18075 431 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 CBLP22681 906 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 CXCR2P25025 360 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 TMEM50BP56557 158 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 LCN2P80188 198 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 PITPNAQ00169 270 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SLC25A3Q00325 362 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MFGE8Q08431 387 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 GAB1Q13480 694 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 COX19Q49B96 90 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 HES5Q5TA89 166 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 LPCAT4Q643R3 524 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ADAM5Q6NVV9 412 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SLC23A3Q6PIS1 610 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 FAM180AQ6UWF9 173 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 RPS27LQ71UM5 84 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 RRM2BQ7LG56 351 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 TCF24Q7RTU0 167 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 H2BFWTQ7Z2G1 175 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 TBC1D26Q86UD7 250 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MEX3DQ86XN8 651 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 FAM46DQ8NEK8 389 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 OR5T3Q8NGG3 340 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 AP3S1Q92572 193 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 PTH2Q96A98 100 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ANKRD9Q96BM1 317 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 AURKBQ96GD4 344 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 JSRP1Q96MG2 331 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 RILPQ96NA2 401 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SFXN2Q96NB2 322 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 LRRC61Q9BV99 259 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 NXF2Q9GZY0 626 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 CDCP1Q9H5V8 836 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SLC25A19Q9HC21 320 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 EXOSC3Q9NQT5 275 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 KCNG2Q9UJ96 466 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ZNF223Q9UK11 482 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 ZNF346Q9UL40 294 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 TEX51A0A1B0GUA7 166 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 DCDC2BA2VCK2 349 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 A6NIZ1 184 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 G3V3Y1 287 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MS4A18H0YCH9 400 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 WWP2O00308 870 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MRASO14807 208 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 GYG2O15488 501 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 CLOCKO15516 846 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 RAP2AP10114 183 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 GZMHP20718 246 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 BDKRB1P46663 353 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 EFNA3P52797 238 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 CTBP2P56545 445 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ALKBH1Q13686 389 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 RGNQ15493 299 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 ZNF141Q15928 474 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 C6orf183Q5T699 404 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 C12orf73Q69YU5 71 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 OR52W1Q6IF63 320 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 BTNL3Q6UXE8 466 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MOB3CQ70IA8 216 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 PRICKLE2Q7Z3G6 844 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 COMMD6Q7Z4G1 85 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 HPS6Q86YV9 775 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SLC5A8Q8N695 610 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MORN4Q8NDC4 146 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 OR51G2Q8NGK0 314 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 OR5AR1Q8NGP9 310 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MYLIPQ8WY64 445 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 R3HDM4Q96D70 268 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 MRPL53Q96EL3 112 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 CENPNQ96H22 339 aaPredicted RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 HBEGFQ99075 208 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 WRAP53Q9BUR4 548 aaKnown RBP3.45□□□□□ -1.86
MCF2-203ENST00000370576 PIGMQ9H3S5 423 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 GSN-AS1Q9NRJ2 163 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 C2orf42Q9NWW7 574 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 NPAP1Q9NZP6 1156 aa3.45□□□□□ -1.86
MCF2-203ENST00000370576 SLAMF8Q9P0V8 285 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms